Hg_chrom1_TN10mRNA_1090
Organism: Heterodera glycines Gene Locus: chr1:12948605-12950202 Feature type: polypeptideProtein Sequence
Length: 302
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.732 | 0.847 | 0.662 | 0.913 | 0.883 | 1.104 | 2.562 | 0.662 | 1.177 | 0.805 | 0.652 | 1.558 | 0.552 | 2.674 | 1.081 | 0.615 | 0.543 | 0.502 | 0.255 | 0.195 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1038
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KKGKIGGFLIQKIQRQRRQ
|
— | — | — | — |
1-21
|
— |
0.755
|
— |
0.000
|
0.041
|
0.088
|
0.011
|
0.120
|
0.451
|
0.187
|
0.324
|
0.003
|
0.612
|
0.292
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005879
|
1.000
|
1.000
|
Hsc_gene_21180.t1
|
Hsc_gene_21180.t1
|
— | — |
KAF7632853.1 Col_cuticle_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+6-58_11-56+|IPR008160+155-211_195-249_231-284+|IPR050632+12-294+
|
SM01088+6-58+
|
PF01391+155-211_195-249_231-284+Collagen_triple_helix_repeat_(20_copies)|PF01484+11-56+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-294+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
87-302
|
1.000
|
1-86
|
9ius_W
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.956
|
30374.370
|
7.848
|
4.000
|
19.868
|
4.305
|
35.430
|
64.570
|
10.927
|
8.940
|
62.583
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
purple
|
4559.673
|
1440.966
|
440.408
|
169.468
|
10906.918
|
34174.523
|
469.872
|
1312.018
|
512.061
|
1221.710
|
917.575
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.941
|
-3.225
|
-1.267
|
5.976
|
1.663
|
-6.175
|
-4.816
|
-1.335
|
— | — |
3.351
|
— | — |