Hg_chrom1_TN10mRNA_1091
Organism: Heterodera glycines Gene Locus: chr1:12950395-12957599 Feature type: polypeptideProtein Sequence
Length: 1,223
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.77 | 1.065 | 0.981 | 0.338 | 1.649 | 1.153 | 0.759 | 0.94 | 0.909 | 1.204 | 0.904 | 1.876 | 0.909 | 0.833 | 1.752 | 1.425 | 0.831 | 0.743 | 0.503 | 0.24 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1039
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRGMNSREEEDGRGRRG,RRRGMNSREEEEEDGRRKR,RRGMNSREEEEEDGRRKRG,KKSKNEQKQRKTDERQKEK,KKAMTERERKTTRDKGGRERGENDKSKRN
|
26-46
|
0.997
|
15-41
|
0.982
|
— | — |
0.000
|
— | — |
0.404
|
0.136
|
0.006
|
0.700
|
0.135
|
0.165
|
0.246
|
0.053
|
0.247
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003019
|
1.000
|
2.000
|
Hsc_gene_21181.t1;Hsc_gene_21181.t2
|
Hsc_gene_21181.t1;Hsc_gene_21181.t2
|
— | — |
KAI6173372.1 BTB/POZ domain-containing protein 8 [Aphelenchoides besseyi]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.949|GO:0110165_0.949|GO:0005622_0.893|GO:0016020_0.882|GO:0043226_0.855|GO:0043229_0.840|GO:0043227_0.785|GO:0043231_0.749|GO:0008150_0.598|GO:0009987_0.566
|
IPR000210+11-93+|IPR011333+3-101+
|
— | — | — |
PTHR22427+9-772+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
95-264;757-1223
|
2.000
|
1-94;265-756
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
137134.160
|
6.698
|
2.500
|
31.725
|
6.623
|
55.846
|
44.154
|
16.435
|
15.290
|
48.242
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1572.327
|
3918.668
|
3298.498
|
1337.595
|
680.671
|
1036.677
|
506.279
|
1504.137
|
2169.970
|
645.507
|
1298.848
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.480
|
-1.688
|
-1.192
|
-1.005
|
0.620
|
-1.024
|
— |
-1.432
|
— | — | — | — | — |
No JSON data available for plots.