Hg_chrom1_TN10mRNA_1092
Organism: Heterodera glycines Gene Locus: chr1:12959887-12961130 Feature type: polypeptideProtein Sequence
Length: 134
(Signal peptide: 1-43)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 1.215 | 0.136 | 0.772 | 0.622 | 1.148 | 0.622 | 1.493 | 0.995 | 2.521 | 0.339 | 1.317 | 2.695 | 1.435 | 0.914 | 1.493 | 0.245 | 0.905 | 1.148 | 0.219 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1040
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-43
|
0.764
|
0.605
|
2.000
|
2.000
|
0.128
|
0.125
|
0.063
|
0.175
|
0.537
|
0.486
|
0.475
|
0.040
|
0.431
|
0.153
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005880
|
1.000
|
1.000
|
Hsc_gene_21183.t1
|
Hsc_gene_21183.t1
|
— |
Q17638.1 UPF0057 membrane protein C04G6.5 [Caenorhabditis elegans]
|
KAI1697918.1 proteolipid membrane potential modulator domain-containing protein [Ditylenchus destructor]
|
No
|
-0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.657|GO:0110165_0.657|GO:0008150_0.608|GO:0005622_0.538|GO:0005737_0.530
|
IPR000612+78-129_82-130_85-100+
|
— |
PF01679+82-130+Proteolipid_membrane_potential_modulator
|
— |
PTHR21659+78-129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-134
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
15029.760
|
8.795
|
5.000
|
14.179
|
14.925
|
35.821
|
64.179
|
9.701
|
4.478
|
44.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1789.581
|
6171.977
|
1802.294
|
898.920
|
801.552
|
875.885
|
702.044
|
2204.050
|
597.589
|
2334.956
|
1590.370
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.006
|
-2.917
|
-0.895
|
-0.197
|
— |
-0.311
|
1.232
|
-1.512
|
— | — | — | — | — |