Hg_chrom1_TN10mRNA_1095
Organism: Heterodera glycines Gene Locus: chr1:12983614-12985661 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.509 | 1.599 | 0.909 | 0.862 | 0.729 | 1.122 | 0.67 | 1.875 | 0.972 | 1.014 | 1.136 | 1.103 | 2.431 | 0.24 | 1.148 | 0.982 | 0.717 | 1.61 | 0.481 | 1.103 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1043
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — |
53-74
|
0.978
|
— | — | — | — |
0.000
|
— | — |
0.379
|
0.254
|
0.116
|
0.625
|
0.155
|
0.256
|
0.241
|
0.008
|
0.282
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005882
|
1.000
|
1.000
|
Hsc_gene_21187.t1
|
Hsc_gene_21187.t1
|
— |
O76584.2 Guanine nucleotide-binding protein alpha-11 subunit [Caenorhabditis elegans]
|
KAI1727784.1 g-protein alpha subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0007186|GO:0019001|GO:0031683
|
GO:0005575_0.830|GO:0110165_0.830|GO:0008150_0.814|GO:0016020_0.712|GO:0009987_0.692|GO:0005622_0.662|GO:0050896_0.654|GO:0065007_0.647|GO:0050789_0.637|GO:0050794_0.624|GO:0003674_0.609|GO:0051716_0.597|GO:0023052_0.560|GO:0007154_0.558|GO:0007165_0.555|GO:0071944_0.555|GO:0005886_0.546|GO:0005737_0.531
|
IPR001019+1-149_1-158_1-160_21-49_69-78+|IPR027417+1-150_1-154+
|
SM00275+1-160+
|
PF00503+1-149+G-protein_alpha_subunit
|
G3DSA:3.40.50.300:FF:003800+1-160+Guanine_nucleotide-binding_protein_G(k)_subunit_alpha
|
PTHR10218+1-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
18499.220
|
9.401
|
9.000
|
26.250
|
16.875
|
48.750
|
51.250
|
16.875
|
9.375
|
47.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
319.404
|
239.977
|
253.966
|
120.981
|
63.162
|
429.281
|
576.791
|
348.186
|
54.198
|
594.613
|
363.007
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.125
|
-0.961
|
-0.970
|
2.779
|
0.437
|
— |
0.869
|
-3.528
|
— |
-3.134
|
— | — |
No JSON data available for plots.