Hg_chrom1_TN10mRNA_1096
Organism: Heterodera glycines Gene Locus: chr1:12987250-12989496 Feature type: polypeptideProtein Sequence
Length: 279
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.458 | 1.334 | 1.043 | 0.371 | 1.553 | 1.103 | 0.725 | 1.075 | 1.354 | 1.259 | 1.032 | 2.741 | 1.294 | 0.62 | 1.682 | 0.922 | 0.529 | 0.706 | 0.827 | 0.949 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1044
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KRSR,KGGKVEREVKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.191
|
0.080
|
0.016
|
0.372
|
0.108
|
0.230
|
0.332
|
0.003
|
0.657
|
0.052
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_21187.t1
|
— |
O76584.2 Guanine nucleotide-binding protein alpha-11 subunit [Caenorhabditis elegans]
|
KAH7698129.1 Protein GPA-11 b, partial [Aphelenchus avenae]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0007165|GO:0007186|GO:0019001|GO:0031683
|
GO:0005575_0.881|GO:0110165_0.881|GO:0008150_0.770|GO:0016020_0.754|GO:0005622_0.654|GO:0009987_0.634|GO:0071944_0.629|GO:0005886_0.600|GO:0050896_0.562|GO:0003674_0.554|GO:0065007_0.548|GO:0050789_0.534|GO:0043226_0.526|GO:0005737_0.514|GO:0050794_0.501
|
IPR001019+50-240_55-277_56-225_74-279_77-92_195-217+|IPR011025+103-209_104-208+|IPR027417+73-227_77-226+
|
SM00275+55-277+
|
PF00503+56-225+G-protein_alpha_subunit
|
— |
PTHR10218+50-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-279
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.672
|
32643.300
|
7.400
|
3.000
|
32.258
|
11.111
|
51.971
|
48.029
|
17.204
|
15.054
|
40.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
200.088
|
206.054
|
210.313
|
56.727
|
16.617
|
463.854
|
467.101
|
106.037
|
5.671
|
298.618
|
173.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.200
|
-1.998
|
-1.781
|
-1.805
|
4.817
|
— |
-2.229
|
2.280
|
-5.858
|
— |
-3.968
|
— | — |
No JSON data available for plots.