Hg_chrom1_TN10mRNA_1097
Organism: Heterodera glycines Gene Locus: chr1:12990880-12995446 Feature type: polypeptideProtein Sequence
Length: 738
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.945 | 0.882 | 0.714 | 0.841 | 0.881 | 0.625 | 1.274 | 1.084 | 1.385 | 1.245 | 0.431 | 1.674 | 1.807 | 0.834 | 0.885 | 1.065 | 1.0 | 1.191 | 0.938 | 0.638 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1045
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — |
1-24
|
0.746
|
0.880
|
12.000
|
3.000
|
0.137
|
0.141
|
0.013
|
0.217
|
0.338
|
0.415
|
0.399
|
0.147
|
0.669
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005883
|
1.000
|
1.000
|
Hsc_gene_21188.t1
|
Hsc_gene_21188.t1
|
— |
P57788.2 Monocarboxylate transporter 4 [Gallus gallus]
|
KAI1708931.1 major facilitator superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0022857|GO:0055085
|
GO:0005575_0.919|GO:0110165_0.919|GO:0016020_0.887|GO:0071944_0.826|GO:0005886_0.818|GO:0008150_0.794|GO:0009987_0.726|GO:0006810_0.717|GO:0051179_0.717|GO:0051234_0.717|GO:0003674_0.702|GO:0055085_0.677|GO:0005215_0.650|GO:0022857_0.650|GO:0015711_0.524|GO:0015849_0.509
|
IPR011701+75-257_483-682+|IPR036259+65-273_66-665_476-707+|IPR050327+65-672+
|
— |
PF07690+75-257_483-682+Major_Facilitator_Superfamily
|
G3DSA:1.20.1250.20:FF:000664+64-282+MonoCarboxylate_Transporter_family
|
PTHR11360+65-672+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
253-454
|
2.000
|
1-252;455-738
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
79607.470
|
5.724
|
-7.000
|
18.564
|
12.060
|
38.347
|
61.653
|
9.350
|
9.214
|
54.743
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1913.872
|
4909.711
|
1793.281
|
1828.398
|
1523.205
|
2074.774
|
2096.123
|
1594.874
|
1426.416
|
1370.742
|
1394.602
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.682
|
-1.562
|
0.136
|
-0.295
|
0.461
|
— |
-0.483
|
0.535
|
— | — | — | — | — |