SCN Proteipedia

Hg_chrom1_TN10mRNA_1100

Organism: Heterodera glycines Gene Locus: chr1:12997438-12999616 Feature type: polypeptide

Protein Sequence

Length: 528

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.035	1.453	0.826	0.522	0.758	1.408	1.06	0.758	1.094	0.768	0.976	1.671	1.42	0.983	1.314	0.893	0.745	1.004	0.291	1.17	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1047	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	Hgg-30\|AF345796.1#TN10pacbiomikado.Chromosome_2G1860.1	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.614	0.139	0.017	0.587	0.173	0.076	0.090	0.011	0.062	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005884	1.000	1.000	Hsc_gene_21190.t1	Hsc_gene_21190.t1	—	Q13310.1 Polyadenylate-binding protein 4 [Homo sapiens]	KAF7635648.1 Polyadenylate-binding protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723	GO:0005575_0.856\|GO:0110165_0.848\|GO:0008150_0.714\|GO:0005622_0.699\|GO:0003674_0.665\|GO:0016020_0.652\|GO:0043226_0.615\|GO:0009987_0.611\|GO:0005488_0.593\|GO:0005737_0.587\|GO:0043229_0.547\|GO:0043227_0.540\|GO:0097159_0.533\|GO:0065007_0.527\|GO:0008152_0.518\|GO:0044237_0.509\|GO:0044238_0.509\|GO:0003676_0.506\|GO:0009058_0.502	IPR000504+31-109_32-105_33-103_119-189_120-192_121-189_212-293_213-286_214-278_319-394_320-390_321-387+\|IPR003954+120-192_213-287_320-390+\|IPR006515+31-494+\|IPR012677+14-119_120-206_207-300_302-401+\|IPR034364+32-111+\|IPR035979+30-196_211-398+\|IPR045305+117-193+	SM00360+32-105_120-192_213-286_320-390+\|SM00361+120-192_213-287_320-390+	PF00076+33-103_121-189_214-278_321-387+RNA_recognition_motif	G3DSA:3.30.70.330:FF:000003+113-200+Polyadenylate-binding_protein\|G3DSA:3.30.70.330:FF:000021+22-112+Polyadenylate-binding_protein\|G3DSA:3.30.70.330:FF:000651+311-398+Poly(A)_binding_protein_cytoplasmic_1_like	PTHR24012+21-226+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	491-528	1.000	1-490	1cvj_H	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.905	58442.410	9.865	24.000	23.485	10.985	46.023	53.977	14.394	9.091	52.652

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	red	1026.642	298.327	460.356	797.869	2125.304	1686.835	4291.533	612.557	3.278	636.809	365.296

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.393	1.282	0.904	1.382	-0.320	1.359	-1.573	2.954	-7.779	8.220	—	—	—

No JSON data available for plots.

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