Hg_chrom1_TN10mRNA_1101
Organism: Heterodera glycines Gene Locus: chr1:13000549-13002454 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.375 | 0.489 | 0.742 | 0.627 | 1.585 | 0.992 | 1.21 | 1.314 | 0.872 | 0.489 | 1.898 | 0.971 | 1.499 | 1.701 | 1.114 | 0.837 | 0.937 | 0.62 | 0.553 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1048
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.859
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,KREREGAEDGRRRVA
|
27-47
|
0.818
|
24-44
|
0.999
|
— | — |
0.000
|
— | — |
0.831
|
0.263
|
0.010
|
0.268
|
0.021
|
0.018
|
0.027
|
0.054
|
0.063
|
0.199
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005885
|
1.000
|
1.000
|
Hsc_gene_21191.t1
|
Hsc_gene_21191.t1
|
— |
Q90268.2 Paired box protein Pax-2a [Danio rerio]
|
KAF7639881.1 Paired domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0006355
|
GO:0008150_0.942|GO:0009987_0.855|GO:0005575_0.826|GO:0110165_0.810|GO:0065007_0.754|GO:0005622_0.749|GO:0043226_0.719|GO:0050789_0.719|GO:0043229_0.716|GO:0032502_0.708|GO:0048856_0.708|GO:0050794_0.701|GO:0032501_0.694|GO:0003674_0.686|GO:0016020_0.646|GO:0005488_0.644|GO:0007275_0.634|GO:0008152_0.625|GO:0009058_0.624|GO:0044238_0.621|GO:0043170_0.614|GO:0044237_0.611|GO:0009059_0.600|GO:0044249_0.600|GO:0010467_0.589|GO:0006139_0.584|GO:0097159_0.579|GO:0034654_0.578|GO:0043227_0.577|GO:0043231_0.572|GO:0016070_0.570|GO:0090304_0.570|GO:0032774_0.567|GO:0141187_0.567|GO:0019222_0.565|GO:0031323_0.565|GO:0048513_0.563|GO:0003676_0.560|GO:0060255_0.560|GO:0080090_0.556|GO:0048731_0.550|GO:0030154_0.548|GO:0048869_0.548|GO:0009889_0.546|GO:0006351_0.542|GO:0009653_0.541|GO:0010468_0.540|GO:0010556_0.540|GO:0031326_0.540|GO:0048518_0.527|GO:0019219_0.521|GO:0051252_0.521|GO:0048522_0.519|GO:0003677_0.515|GO:0006355_0.515|GO:0043565_0.515|GO:2001141_0.515
|
IPR001523+59-183_59-185_63-78_81-99_101-118_119-136+|IPR009057+61-184+|IPR036388+53-127_128-191+|IPR043182+93-109+|IPR043565+55-248+
|
SM00351+59-183+
|
PF00292+59-183+'Paired_box'_domain
|
G3DSA:1.10.10.10:FF:000003+128-190+Paired_box_protein_Pax-6|G3DSA:1.10.10.10:FF:000013+54-127+Paired_box_8_isoform_1
|
PTHR45636+55-248+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
173-305
|
2.000
|
1-172;306-372
|
1mdm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
40781.650
|
10.573
|
23.500
|
20.430
|
8.602
|
45.430
|
54.570
|
13.978
|
6.452
|
54.301
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
cyan
|
44.097
|
44.079
|
123.880
|
88.515
|
45.570
|
45.176
|
70.779
|
68.851
|
2.764
|
8.281
|
5.917
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.263
|
0.870
|
-0.378
|
-0.994
|
— |
0.658
|
— | — | — |
5.302
|
— | — | — |
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