Hg_chrom1_TN10mRNA_1104
Organism: Heterodera glycines Gene Locus: chr1:13011970-13014742 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.844 | 1.399 | 0.868 | 0.858 | 1.521 | 0.851 | 0.247 | 1.349 | 1.291 | 1.486 | 1.226 | 0.854 | 1.498 | 0.798 | 1.228 | 0.889 | 1.088 | 0.692 | 1.277 | 0.366 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1051
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
PPAKRRM,KKEYALATFLDVRFKDK
|
1-35
|
0.915
|
— | — | — | — |
0.000
|
— | — |
0.708
|
0.185
|
0.016
|
0.513
|
0.109
|
0.049
|
0.058
|
0.022
|
0.057
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000117
|
10.000
|
4.000
|
Hsc_gene_14127.t1;Hsc_gene_15599.t1;Hsc_gene_20567.t1;Hsc_gene_23071.t1
|
Hsc_gene_15599.t1;Hsc_gene_20567.t1
|
— | — |
XP_042623294.1 zinc finger BED domain-containing protein 4-like [Cyprinus carpio]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.910|GO:0005622_0.865|GO:0003674_0.841|GO:0016020_0.831|GO:0005737_0.815|GO:0043226_0.810|GO:0043229_0.792|GO:0005488_0.763|GO:0043227_0.755|GO:0005515_0.752|GO:0043231_0.742|GO:0042802_0.671|GO:0005634_0.618|GO:0031974_0.581|GO:0043233_0.581|GO:0070013_0.580|GO:0031981_0.574|GO:0005654_0.559
|
IPR012337+85-479+|IPR052035+70-481+
|
— | — | — |
PTHR46481+70-481+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22
|
1.000
|
23-482
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
55662.810
|
7.606
|
7.500
|
30.705
|
10.996
|
52.905
|
47.095
|
16.805
|
13.900
|
44.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
177.589
|
179.549
|
208.665
|
169.957
|
151.669
|
172.830
|
54.568
|
299.839
|
132.140
|
213.943
|
178.885
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.654
|
0.691
|
-2.317
|
— | — | — | — | — |
No JSON data available for plots.