Hg_chrom1_TN10mRNA_1106
Organism: Heterodera glycines Gene Locus: chr1:13017703-13022601 Feature type: polypeptideProtein Sequence
Length: 619
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 1.014 | 0.734 | 0.78 | 0.835 | 1.45 | 0.692 | 2.342 | 1.221 | 1.354 | 0.612 | 1.616 | 1.616 | 0.87 | 1.319 | 0.969 | 0.795 | 0.906 | 1.74 | 1.188 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1053
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRFHLTNLFDNSFLLKGRK
|
48-68
|
0.998
|
4-84
|
0.999
|
— | — |
0.000
|
— | — |
0.048
|
0.137
|
0.011
|
0.112
|
0.397
|
0.358
|
0.275
|
0.048
|
0.631
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005889
|
1.000
|
1.000
|
Hsc_gene_21195.t1
|
Hsc_gene_21195.t1;Hsc_gene_21195.t2;Hsc_gene_21195.t3
|
— |
Q03412.1 Innexin unc-7 [Caenorhabditis elegans]
|
KAI3422457.1 Innexin unc-7 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.879|GO:0110165_0.879|GO:0008150_0.866|GO:0009987_0.753|GO:0003674_0.619|GO:0030054_0.616|GO:0065007_0.596|GO:0051179_0.595|GO:0006810_0.586|GO:0051234_0.586|GO:0016020_0.584|GO:0050789_0.578|GO:0071944_0.543|GO:0032501_0.542|GO:0005886_0.539|GO:0005911_0.521|GO:0070161_0.521|GO:0005921_0.504
|
IPR000990+229-607_242-609_247-603_270-281_298-307_327-349_424-438_472-481_496-512+
|
— |
PF00876+247-603+Innexin
|
— |
PTHR11893+229-607+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
84-196
|
2.000
|
1-83;197-619
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
71820.400
|
8.560
|
23.500
|
24.233
|
16.801
|
45.880
|
54.120
|
15.186
|
9.047
|
43.780
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1279.449
|
1135.697
|
2507.411
|
1260.329
|
434.547
|
201.035
|
340.933
|
1287.625
|
477.358
|
2551.728
|
1662.712
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
— |
-0.884
|
-1.567
|
-1.098
|
0.774
|
2.579
|
-1.775
|
-2.523
|
— | — | — | — |
No JSON data available for plots.