Hg_chrom1_TN10mRNA_1107
Organism: Heterodera glycines Gene Locus: chr1:13031150-13032706 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.763 | 1.116 | 1.148 | 1.306 | 1.136 | 0.842 | 0.902 | 1.389 | 0.954 | 1.467 | 0.995 | 0.594 | 2.034 | 0.728 | 0.876 | 1.154 | 0.745 | 0.918 | 0.583 | 0.149 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1054
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.650
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKEERKRWKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.796
|
0.086
|
0.004
|
0.439
|
0.141
|
0.025
|
0.093
|
0.002
|
0.041
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005890
|
1.000
|
1.000
|
Hsc_gene_21196.t1
|
Hsc_gene_21196.t1;Hsc_gene_21196.t2
|
— |
Q5FVB6.2 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Xenopus tropicalis]
|
KAK5965453.1 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit [Trichostrongylus colubriformis]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0036265
|
GO:0005575_0.902|GO:0110165_0.898|GO:0005622_0.835|GO:0016020_0.811|GO:0008150_0.803|GO:0043226_0.777|GO:0043229_0.761|GO:0009987_0.751|GO:0043227_0.730|GO:0043231_0.717|GO:0005737_0.654|GO:0005634_0.624|GO:0003674_0.577|GO:0032991_0.509|GO:0005488_0.504|GO:0008152_0.503
|
IPR001680+56-94_107-143_151-190_193-232+|IPR015943+2-148_153-319+|IPR028884+10-389_13-386+|IPR036322+66-316+
|
SM00320+56-94_107-143_151-190_193-232+
|
— | — |
PTHR16288+13-386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
377-396
|
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
43727.750
|
5.969
|
-3.500
|
26.768
|
11.364
|
47.475
|
52.525
|
13.636
|
13.131
|
51.515
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
midnightblue
|
594.202
|
680.715
|
632.725
|
636.531
|
635.477
|
496.738
|
1197.049
|
484.919
|
441.877
|
481.669
|
464.615
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.335
|
-0.234
|
— | — |
-0.341
|
1.280
|
— |
1.447
|
— | — | — | — | — |
No JSON data available for plots.