Hg_chrom1_TN10mRNA_1109
Organism: Heterodera glycines Gene Locus: chr1:13039945-13042930 Feature type: polypeptideProtein Sequence
Length: 540
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 0.689 | 0.505 | 0.319 | 2.006 | 1.519 | 1.477 | 1.389 | 0.412 | 0.325 | 1.347 | 1.416 | 0.72 | 0.214 | 2.91 | 2.116 | 0.425 | 0.421 | 0.0 | 0.272 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1056
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.929
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,RKDQSCAKKRKKKYA,RKSRCHRRHRQKRAKQ,RRSHSRSVAAEKSRKGQK,RRRSSRSVSSETAKRLRKS,RRHSHRHGCRSCCHRQSRK,AKKQKKEMQKKRRKKQKKKHHSEKELEKRVAN
|
49-79
|
0.832
|
— | — | — | — |
0.000
|
— | — |
0.949
|
0.041
|
0.017
|
0.190
|
0.026
|
0.013
|
0.081
|
0.051
|
0.124
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005891
|
1.000
|
1.000
|
Hsc_gene_21198.t1
|
— | — | — |
KAI3422455.1 hypothetical protein GPALN_012963 [Globodera pallida]
|
KAK3132551
|
0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-540
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
60405.080
|
11.086
|
52.500
|
40.741
|
6.296
|
67.037
|
32.963
|
25.926
|
14.815
|
45.926
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
5004.154
|
481.031
|
3534.940
|
1124.284
|
264.656
|
586.209
|
86.892
|
1033.464
|
22972.438
|
1997.043
|
10986.498
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.648
|
1.087
|
-1.544
|
-2.118
|
1.161
|
-2.745
|
0.718
|
-3.433
|
3.422
|
-4.196
|
-2.789
|
— | — |
No JSON data available for plots.