SCN Proteipedia

Hg_chrom1_TN10mRNA_111

Organism: Heterodera glycines Gene Locus: chr1:740805-773413 Feature type: polypeptide

Protein Sequence

Length: 4,743

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.084	1.059	1.311	0.712	1.061	1.914	0.658	1.718	0.862	1.419	0.431	1.153	1.206	0.734	1.269	1.018	0.788	0.942	0.973	0.316	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_107	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KEQLVVKRKRKRRK,KRTEDAIHLIEKRCKT,RRLIPYIASDYRKDRI,RKDRIWMRRTRKARRN,RRAGKRTEDAIHLIEKRCK	—	—	—	—	—	—	0.000	—	—	0.822	0.158	0.034	0.394	0.087	0.099	0.053	0.043	0.078	0.043

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005580	1.000	1.000	Hsc_gene_20308.t1	Hsc_gene_20306.t1	—	Q9NU22.2 Midasin [Homo sapiens]	KAI1718698.1 AAA domain (dynein-related subfamily) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000027\|GO:0005524\|GO:0005634\|GO:0016887	GO:0008150_0.967\|GO:0009987_0.926\|GO:0005575_0.923\|GO:0071840_0.802\|GO:0110165_0.795\|GO:0005622_0.710\|GO:0044085_0.709\|GO:0016020_0.686\|GO:0022613_0.670\|GO:0042254_0.670\|GO:0043226_0.655\|GO:0005737_0.617\|GO:0043229_0.616\|GO:0043227_0.592\|GO:0043231_0.569\|GO:0003674_0.547\|GO:0065007_0.547\|GO:0050789_0.527\|GO:0005634_0.517	IPR002035+4510-4662+\|IPR003593+63-270_422-546_709-858_1010-1175_1374-1501+\|IPR011704+67-169_425-501_712-848_1013-1166_1377-1518_1836-1929+\|IPR012099+8-470_467-1060_1063-1798_1808-2058_2414-4743+\|IPR027417+50-214_60-268_402-599_407-553_683-955_695-865_985-1253_986-1194_1361-1535_1367-1623_1722-1943_1728-1940+\|IPR036465+4495-4661_4509-4665+\|IPR040848+860-959+	SM00382+63-270_422-546_709-858_1010-1175_1374-1501+	PF07728+67-169_425-501_712-848_1013-1166_1377-1518_1836-1929+AAA_domain_(dynein-related_subfamily)\|PF17867+860-959+Midasin_AAA_lid_domain	G3DSA:3.40.50.300:FF:000142+695-865_997-1184+Midasin\|G3DSA:3.40.50.300:FF:001384+1361-1534+Midasin	PTHR48103+1064-2493+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-8;1784-1831;2780-2837;3552-3607;3849-4438	5.000	9-1783;1832-2779;2838-3551;3608-3848;4439-4743	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.665	529076.140	5.022	-132.500	26.081	10.120	50.032	49.968	12.503	13.578	50.643

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	7019.346	14850.520	6216.359	6782.717	6198.253	5198.601	4449.573	4149.349	7511.912	7133.689	7295.784

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.486	-1.268	0.235	-0.162	-0.239	-0.214	-0.431	0.244	—	—	—	—	—

No JSON data available for plots.

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