Hg_chrom1_TN10mRNA_1113
Organism: Heterodera glycines Gene Locus: chr1:13050853-13053111 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.318 | 0.67 | 0.293 | 2.219 | 1.816 | 1.045 | 1.133 | 0.818 | 0.498 | 2.447 | 1.333 | 0.157 | 0.381 | 1.85 | 0.405 | 1.115 | 0.429 | 0.436 | 0.333 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1060
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KREEGQQKEKKRIRT,KKAKGTEKKEKEKGKKE,RRNHKISTWKNRPKRKNN,RKKANKAKQWQRNSGRERR,KKANKAKQWQRNSGRERRQ,RKGENGQKREETEEKKAKG,KREETEEKKAKGTEKKEKE,KKEKEKGKKETIEMEKKKN,KKKNCAELANLDEKKEERK,KKEERKGGKGEEKQQQKKRGEEKGQTK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.696
|
0.149
|
0.017
|
0.324
|
0.027
|
0.024
|
0.069
|
0.001
|
0.058
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005893
|
1.000
|
1.000
|
Hsc_gene_21201.t1
|
— | — |
Q4SQ06.1 Nucleolar protein 16 [Tetraodon nigroviridis]
|
CDP91519.1 Bm4225 [Brugia malayi]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-353
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
40532.520
|
10.586
|
33.000
|
44.476
|
4.533
|
66.856
|
33.144
|
27.479
|
16.997
|
40.227
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
655.872
|
67.738
|
1472.770
|
651.405
|
333.566
|
297.126
|
340.392
|
1062.992
|
477.157
|
926.826
|
734.110
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.212
|
3.127
|
-1.068
|
-0.998
|
— | — |
1.737
|
-1.500
|
— | — | — | — | — |
No JSON data available for plots.