Hg_chrom1_TN10mRNA_1115
Organism: Heterodera glycines Gene Locus: chr1:13058318-13060829 Feature type: polypeptideProtein Sequence
Length: 493
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.415 | 0.664 | 1.119 | 0.845 | 0.936 | 0.99 | 0.913 | 0.811 | 0.877 | 0.645 | 1.551 | 2.085 | 1.911 | 0.952 | 1.014 | 0.898 | 0.43 | 1.872 | 0.955 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1062
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.892
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
PKPS
|
— | — | — | — |
1-29
|
0.819
|
0.956
|
0.000
|
0.000
|
0.164
|
0.141
|
0.058
|
0.289
|
0.207
|
0.158
|
0.176
|
0.029
|
0.455
|
0.862
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005895
|
1.000
|
1.000
|
Hsc_gene_21204.t1
|
Hsc_gene_21204.t1
|
— |
P86473.2 Endochitinase [Actinidia chinensis var. chinensis]
|
KAI1709608.1 chitinase class I domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004568|GO:0006032|GO:0016998
|
GO:0008150_0.814|GO:0003674_0.709|GO:0050896_0.679|GO:0006950_0.590|GO:0044419_0.569|GO:0005575_0.568|GO:0009605_0.565|GO:0009607_0.563|GO:0110165_0.562|GO:0043207_0.560|GO:0051707_0.560|GO:0006952_0.535|GO:0098542_0.531
|
IPR000726+190-351+|IPR023346+60-359+
|
— |
PF00182+190-351+Chitinase_class_I
|
— |
PTHR47836+28-445+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
54905.160
|
7.468
|
5.500
|
19.473
|
15.010
|
41.785
|
58.215
|
10.751
|
8.722
|
54.564
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
121.616
|
210.640
|
91.166
|
328.925
|
97.468
|
44.326
|
49.287
|
117.078
|
17.933
|
166.537
|
102.849
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.439
|
0.506
|
1.961
|
-1.784
|
-1.123
|
— |
1.292
|
-1.103
|
— |
4.398
|
— | — | — |