Hg_chrom1_TN10mRNA_112
Organism: Heterodera glycines Gene Locus: chr1:752014-753362 Feature type: polypeptideProtein Sequence
Length: 237
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.276 | 0.981 | 1.381 | 0.436 | 1.477 | 0.649 | 0.502 | 0.633 | 0.844 | 0.969 | 2.301 | 2.234 | 0.938 | 1.136 | 0.431 | 0.482 | 0.899 | 0.511 | 0.974 | 1.241 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_108
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
nucleus
|
RKIMQQTNAKKAFKK,KKGDKLKPKKPPAKNAPEAPVTGKSKAEEKGQEKEEKKGTTDKKEAGAEKKKKEL
|
— | — | — | — |
1-23
|
0.996
|
1.000
|
0.000
|
0.000
|
0.263
|
0.292
|
0.061
|
0.311
|
0.960
|
0.136
|
0.198
|
0.077
|
0.260
|
0.662
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005581
|
1.000
|
1.000
|
Hsc_gene_20307.t1
|
Hsc_gene_20307.t1
|
— |
H9D1R1.1 Thioredoxin domain-containing protein 12 [Epinephelus coioides]
|
KAI1702122.1 thioredoxin-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.808|GO:0110165_0.808|GO:0005622_0.719|GO:0016020_0.684|GO:0008150_0.683|GO:0043226_0.683|GO:0043229_0.668|GO:0005737_0.643|GO:0043227_0.629|GO:0043231_0.603|GO:0071944_0.558|GO:0005886_0.545|GO:0009987_0.539|GO:0003674_0.511
|
IPR013766+30-173+|IPR036249+46-147+|IPR051099+12-235+
|
— |
PF13899+52-135+Thioredoxin-like
|
— |
PTHR15337+12-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
172-237
|
1.000
|
1-171
|
2k8v_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
26899.850
|
8.204
|
3.500
|
35.021
|
10.127
|
50.633
|
49.367
|
18.565
|
16.456
|
46.414
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |