SCN Proteipedia

Hg_chrom1_TN10mRNA_1120

Organism: Heterodera glycines Gene Locus: chr1:13068949-13070105 Feature type: polypeptide

Protein Sequence

Length: 262

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.888	0.533	1.11	0.526	1.399	1.762	0.954	0.954	0.763	1.289	0.925	1.796	1.378	0.294	1.636	0.654	0.876	1.157	1.174	0.449	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1067	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RSRKRTR,SRKRTRK,KRTRKEPIAHDDVIRAVKK,RKEPIAHDDVIRAVKKLKV	—	—	—	—	—	—	0.000	—	—	0.742	0.284	0.024	0.403	0.097	0.289	0.145	0.014	0.091	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005899	1.000	1.000	Hsc_gene_21209.t1	Hsc_gene_21209.t1	—	Q5U3V9.2 Vacuolar-sorting protein SNF8 [Danio rerio]	KAI1723866.1 EAP30/Vps36 family domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000814\|GO:0071985	GO:0008150_0.933\|GO:0005575_0.889\|GO:0110165_0.881\|GO:0009987_0.878\|GO:0005622_0.822\|GO:0008152_0.794\|GO:0016020_0.782\|GO:0005737_0.777\|GO:0044238_0.767\|GO:0043226_0.749\|GO:0043170_0.745\|GO:0051179_0.737\|GO:0019538_0.734\|GO:0043229_0.732\|GO:0006810_0.727\|GO:0051234_0.727\|GO:0043227_0.708\|GO:0051641_0.707\|GO:0009056_0.701\|GO:0043231_0.695\|GO:0003674_0.694\|GO:0051649_0.694\|GO:0009057_0.687\|GO:0016192_0.685\|GO:0046907_0.684\|GO:0030163_0.679\|GO:0071985_0.670\|GO:0065007_0.634\|GO:0005488_0.626\|GO:0050789_0.618\|GO:0005773_0.604\|GO:0050794_0.597\|GO:0071840_0.589\|GO:0044237_0.587\|GO:0016043_0.582\|GO:0009058_0.575\|GO:0071944_0.565\|GO:0005886_0.560\|GO:0044249_0.552\|GO:0006996_0.548\|GO:0009059_0.544\|GO:0006139_0.540\|GO:0061024_0.536\|GO:0010467_0.534\|GO:0019222_0.534\|GO:0031323_0.533\|GO:0060255_0.530\|GO:0005829_0.526\|GO:0061025_0.526\|GO:0010256_0.525\|GO:0016197_0.525\|GO:0034654_0.525\|GO:0048284_0.525\|GO:0080090_0.523\|GO:0090304_0.522\|GO:0009889_0.521\|GO:0010556_0.519\|GO:0031326_0.519\|GO:0010468_0.516\|GO:0016070_0.515\|GO:0032774_0.513\|GO:0141187_0.513\|GO:0019219_0.505\|GO:0006351_0.504\|GO:0051252_0.504\|GO:0006355_0.502\|GO:2001141_0.502\|GO:0006366_0.497\|GO:0006357_0.496\|GO:0032991_0.495\|GO:0005634_0.485\|GO:0008289_0.484\|GO:0031974_0.458\|GO:0043233_0.456\|GO:0070013_0.456\|GO:0031981_0.451\|GO:0012505_0.448\|GO:0005515_0.440\|GO:0031090_0.439\|GO:0031982_0.439\|GO:0005654_0.438\|GO:0031410_0.419\|GO:0097708_0.419\|GO:0098588_0.419\|GO:0098796_0.413\|GO:0005768_0.403\|GO:0012506_0.401\|GO:0030659_0.401\|GO:0000814_0.395\|GO:0010008_0.395\|GO:0036452_0.395\|GO:0048518_0.395\|GO:0048522_0.394\|GO:0065008_0.369\|GO:0009893_0.368\|GO:0032879_0.365\|GO:0044085_0.363\|GO:0031325_0.362\|GO:0010604_0.360\|GO:0051049_0.360\|GO:0009891_0.358\|GO:0022607_0.358\|GO:0031328_0.358\|GO:0051246_0.358\|GO:0044248_0.357\|GO:0010557_0.356\|GO:0042802_0.355\|GO:0009894_0.351\|GO:0010628_0.351	IPR016689+3-252_4-252+\|IPR036388+94-176_177-261+\|IPR036390+26-179_180-247+\|IPR040608+9-231+	—	PF04157+9-231+EAP30/Vps36_family	G3DSA:1.10.10.10:FF:000085+94-176+Vacuolar-sorting_protein_SNF8	PTHR12806+3-252+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	261-262	1.000	1-260	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.541	29778.940	6.957	1.500	30.534	9.924	49.618	50.382	16.031	14.504	44.656

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	1016.377	901.278	846.402	623.533	710.065	698.244	899.746	992.603	1749.929	1007.252	1325.542

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.321	-0.669	-0.332	0.155	—	0.377	0.403	—	—	—	—	—	—

No JSON data available for plots.

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