Hg_chrom1_TN10mRNA_1122
Organism: Heterodera glycines Gene Locus: chr1:13073387-13074614 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.659 | 0.853 | 0.909 | 1.264 | 1.111 | 0.769 | 0.873 | 1.5 | 1.185 | 0.676 | 1.717 | 1.176 | 1.574 | 0.192 | 2.517 | 1.048 | 1.038 | 0.404 | 0.513 | 0.686 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1069
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
GKKKERTRKGEMKRKQRGGGRRCERKRTKEERIKEKKRRQRQKAKTDEGRKSKGKEGTEKTKRVKEKKNGKEETKEERRAEDKKRKRQTKTKTGR
|
— | — |
68-97
|
0.912
|
— | — |
0.000
|
— | — |
0.022
|
0.058
|
0.012
|
0.083
|
0.204
|
0.049
|
0.141
|
0.054
|
0.868
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001709
|
1.000
|
3.000
|
Hsc_gene_21211.t1;Hsc_gene_21211.t2;Hsc_gene_21211.t3
|
Hsc_gene_21211.t1;Hsc_gene_21211.t2
|
— | — |
KAI6219031.1 Ly-6-related family-containing protein [Aphelenchoides fujianensis]
|
No
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR010558+20-182_32-161+
|
— |
PF06579+32-161+Caenorhabditis_elegans_ly-6-related_protein
|
— |
PTHR34722+20-182+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
192-300
|
1.000
|
1-191
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
34936.990
|
10.821
|
40.500
|
38.333
|
11.667
|
58.667
|
41.333
|
26.667
|
11.667
|
42.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
299.836
|
355.131
|
985.212
|
389.671
|
116.387
|
138.628
|
77.116
|
367.568
|
305.362
|
171.618
|
228.937
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.242
|
— |
-1.229
|
-1.777
|
— |
-0.836
|
1.306
|
-2.111
|
— | — | — | — | — |
No JSON data available for plots.