SCN Proteipedia

Hg_chrom1_TN10mRNA_1124

Organism: Heterodera glycines Gene Locus: chr1:13082701-13084582 Feature type: polypeptide

Protein Sequence

Length: 355

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.753	0.786	0.768	0.777	1.268	1.372	0.838	1.549	0.814	0.723	1.067	1.657	2.113	1.246	1.782	1.046	0.554	0.683	1.517	0.497	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1071	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRPDAVARYRIRKRNG,RRQNTPSQEEKMRLARR,KWEAKGGGREAKGRKKEEKGKGREIKDK	—	—	—	—	—	—	0.000	—	—	0.814	0.150	0.010	0.346	0.071	0.092	0.077	0.002	0.066	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003025	1.000	2.000	Hsc_gene_21214.t1;Hsc_gene_21214.t2	Hsc_gene_21214.t1;Hsc_gene_21214.t2	—	Q62232.2 Homeobox protein SIX2 [Mus musculus]	KAI3422441.1 SIX homeobox, variant 2 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.850\|GO:0009987_0.784\|GO:0003674_0.725\|GO:0005575_0.703\|GO:0110165_0.696\|GO:0005488_0.690\|GO:0065007_0.683\|GO:0050789_0.669\|GO:0005622_0.665\|GO:0050794_0.650\|GO:0032502_0.649\|GO:0048856_0.649\|GO:0043226_0.642\|GO:0043229_0.639\|GO:0032501_0.624\|GO:0016020_0.622\|GO:0097159_0.603\|GO:0007275_0.587\|GO:0003676_0.586\|GO:0008152_0.564\|GO:0044238_0.564\|GO:0043170_0.562\|GO:0009058_0.559\|GO:0009059_0.553\|GO:0044237_0.553\|GO:0044249_0.553\|GO:0043227_0.547\|GO:0010467_0.545\|GO:0043231_0.543\|GO:0048731_0.539\|GO:0006139_0.534\|GO:0019222_0.518\|GO:0031323_0.518\|GO:0034654_0.512\|GO:0090304_0.510\|GO:0003677_0.506\|GO:0016070_0.506\|GO:0060255_0.502\|GO:0080090_0.502	IPR001356+221-283_226-277_227-278_228-279+\|IPR009057+219-284+\|IPR017970+254-277+\|IPR031701+101-215+	SM00389+221-283+	PF00046+227-278+Homeodomain\|PF16878+101-215+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain	—	PTHR10390+69-294+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	234-355	1.000	1-233	4egc_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.856	40961.570	9.912	19.500	30.704	14.366	50.141	49.859	18.873	11.831	45.070

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	281.901	985.200	152.123	122.661	180.879	213.766	111.821	67.070	68.683	494.233	311.854

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.925	-3.142	—	0.528	0.256	-0.926	-1.782	0.881	—	—	—	—	—

No JSON data available for plots.

Back to Browser