SCN Proteipedia

Hg_chrom1_TN10mRNA_1125

Organism: Heterodera glycines Gene Locus: chr1:13085440-13087284 Feature type: polypeptide

Protein Sequence

Length: 434

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.072	0.697	0.587	0.397	1.19	2.54	0.823	2.189	0.512	0.934	0.419	1.626	1.024	1.374	1.364	1.448	0.718	0.559	0.886	1.017	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1072	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.854	0.177	0.014	0.339	0.048	0.075	0.089	0.010	0.058	0.026

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005901	1.000	1.000	Hsc_gene_21215.t1	Hsc_gene_21215.t1	—	Q9I8H0.1 Homeobox protein six1 [Xenopus laevis]	KAI1719831.1 homeobox domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0003677\|GO:0006355	GO:0008150_0.870\|GO:0009987_0.796\|GO:0003674_0.755\|GO:0005488_0.755\|GO:0065007_0.749\|GO:0050789_0.742\|GO:0050794_0.735\|GO:0032502_0.733\|GO:0048856_0.733\|GO:0005575_0.709\|GO:0032501_0.705\|GO:0003676_0.700\|GO:0097159_0.700\|GO:0110165_0.694\|GO:0007275_0.686\|GO:0005622_0.661\|GO:0043226_0.650\|GO:0043229_0.642\|GO:0048731_0.639\|GO:0003677_0.638\|GO:0043565_0.638\|GO:0008152_0.629\|GO:0019222_0.629\|GO:0031323_0.629\|GO:0044237_0.629\|GO:0044238_0.628\|GO:0080090_0.628\|GO:0009058_0.620\|GO:0009059_0.620\|GO:0010467_0.620\|GO:0043170_0.620\|GO:0044249_0.620\|GO:0060255_0.619\|GO:0006139_0.617\|GO:0016070_0.617\|GO:0032774_0.617\|GO:0034654_0.617\|GO:0090304_0.617\|GO:0141187_0.617\|GO:0009889_0.616\|GO:0031326_0.616\|GO:0019219_0.615\|GO:0051252_0.615\|GO:0010556_0.607\|GO:0016020_0.603\|GO:0006351_0.602\|GO:0010468_0.602\|GO:0006355_0.599\|GO:2001141_0.599\|GO:0003690_0.585\|GO:1990837_0.585\|GO:0030154_0.575\|GO:0048869_0.575\|GO:0043227_0.550\|GO:0048513_0.544\|GO:0043231_0.528\|GO:0005634_0.526	IPR001356+157-217_160-221_164-215_166-215+\|IPR009057+157-218+\|IPR017970+192-215+\|IPR031701+44-154+	SM00389+160-221+	PF00046+166-215+Homeodomain\|PF16878+44-154+Transcriptional_regulator,_SIX1,_N-terminal_SD_domain	G3DSA:1.10.10.60:FF:000046+159-223+SIX_homeobox_3	PTHR10390+30-319+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-30;179-434	1.000	31-178	4egc_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.790	48551.810	7.024	5.500	24.194	12.673	51.613	48.387	13.825	10.369	48.848

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	788.741	3234.700	987.157	576.105	212.337	108.832	136.064	523.781	869.612	631.419	733.502

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.941	-2.627	-0.669	-1.471	-0.950	—	2.165	-1.802	—	—	—	—	—

No JSON data available for plots.

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