Hg_chrom1_TN10mRNA_1129
Organism: Heterodera glycines Gene Locus: chr1:13093853-13096691 Feature type: polypeptideProtein Sequence
Length: 334
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.487 | 1.462 | 0.762 | 0.619 | 1.697 | 0.691 | 0.642 | 1.347 | 0.865 | 1.173 | 1.86 | 2.29 | 1.164 | 0.691 | 1.65 | 0.727 | 0.736 | 0.862 | 0.691 | 0.528 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1075
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
LGEV,KKRRERKKSKITKKKRLM,KEGKKKKRVNAAKALEKRILKKNKKKRKSTGTK
|
40-61
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.932
|
0.038
|
0.005
|
0.224
|
0.035
|
0.006
|
0.013
|
0.001
|
0.031
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003026
|
2.000
|
1.000
|
Hsc_gene_21219.t1
|
Hsc_gene_21219.t1
|
— |
P34524.1 Ribosome biogenesis protein BRX1 homolog [Caenorhabditis elegans]
|
KAI3422434.1 Ribosome biogenesis protein BRX1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006364|GO:0019843
|
GO:0005575_0.931|GO:0110165_0.931|GO:0005622_0.894|GO:0043226_0.861|GO:0043229_0.850|GO:0016020_0.847|GO:0043227_0.795|GO:0043231_0.791|GO:0043228_0.713|GO:0043232_0.713|GO:0008150_0.707|GO:0005634_0.683|GO:0009987_0.666|GO:0031974_0.653|GO:0043233_0.648|GO:0070013_0.644|GO:0031981_0.635|GO:0005730_0.602|GO:0071840_0.553|GO:0016043_0.541|GO:0003674_0.537
|
IPR007109+39-229_42-223_47-222+|IPR026532+8-291+
|
SM00879+42-223+
|
PF04427+47-222+Brix_domain
|
G3DSA:3.40.50.10480:FF:000009+40-218+Ribosome_biogenesis_protein,_putative
|
PTHR13634+8-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-27;245-334
|
1.000
|
28-244
|
5z1g_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
39018.070
|
10.271
|
24.500
|
37.425
|
9.581
|
55.988
|
44.012
|
23.054
|
14.371
|
40.719
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
23.832
|
50.565
|
31.770
|
19.446
|
15.950
|
15.232
|
4.359
|
6.051
|
35.369
|
23.974
|
28.858
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.898
|
-1.515
|
-0.602
|
— | — |
-1.799
|
-1.438
|
— | — | — | — | — | — |
No JSON data available for plots.