SCN Proteipedia

Hg_chrom1_TN10mRNA_1131

Organism: Heterodera glycines Gene Locus: chr1:13099431-13101538 Feature type: polypeptide

Protein Sequence

Length: 434

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.938	1.34	1.257	0.238	1.306	0.768	0.933	0.576	1.434	1.339	1.187	1.22	1.344	0.399	0.987	0.79	0.793	1.082	0.532	0.745	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1078	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	—	14-38	0.916	27-48	0.955	—	—	0.000	—	—	0.488	0.179	0.048	0.542	0.188	0.146	0.125	0.042	0.140	0.045

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005903	1.000	1.000	Hsc_gene_21220.t1	Hsc_gene_21220.t1	—	O16520.3 Eukaryotic peptide chain release factor subunit 1 [Caenorhabditis elegans]	KAI3422433.1 Eukaryotic peptide chain release factor subunit 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003747\|GO:0006415	GO:0008150_0.930\|GO:0009987_0.865\|GO:0005575_0.802\|GO:0008152_0.797\|GO:0110165_0.787\|GO:0044238_0.774\|GO:0044237_0.772\|GO:0003674_0.760\|GO:0009058_0.760\|GO:0043170_0.735\|GO:0044249_0.734\|GO:0071840_0.734\|GO:0016043_0.730\|GO:0009059_0.716\|GO:0019538_0.716\|GO:0010467_0.709\|GO:0006412_0.684\|GO:0006414_0.684\|GO:0043933_0.683\|GO:0005622_0.679\|GO:0005488_0.673\|GO:0022411_0.673\|GO:0006415_0.670\|GO:0032984_0.670\|GO:0005737_0.632\|GO:0097159_0.597\|GO:0003676_0.574\|GO:0003723_0.574\|GO:0065007_0.568\|GO:0050789_0.555\|GO:0050794_0.541\|GO:0019222_0.512\|GO:0031323_0.509\|GO:0060255_0.506\|GO:0080090_0.504	IPR004403+3-420_14-414+\|IPR005140+5-141_18-139+\|IPR005141+145-277+\|IPR005142+280-414+\|IPR024049+2-136_8-142+\|IPR029064+277-417_278-430+\|IPR042226+137-276+	SM01194+5-141+	PF03463+18-139+eRF1_domain_1\|PF03464+145-277+eRF1_domain_2\|PF03465+280-414+eRF1_domain_3	G3DSA:3.30.1330.30:FF:000006+278-433+Peptide_chain_release_factor_subunit_1\|G3DSA:3.30.420.60:FF:000001+137-276+Eukaryotic_peptide_chain_release_factor_subunit_1\|G3DSA:3.30.960.10:FF:000001+3-136+Eukaryotic_peptide_chain_release_factor_subunit_1	PTHR10113+3-420+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-434	3j5y_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.510	48258.980	5.169	-6.500	28.571	9.217	47.696	52.304	13.825	14.747	48.848

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	grey	2588.171	1450.435	1603.848	2652.438	3057.945	3247.365	2364.344	2044.205	3082.587	2853.592	2951.733

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.734	0.834	0.173	—	-0.447	-0.773	0.353	—	—	—	—	—

No JSON data available for plots.

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