Hg_chrom1_TN10mRNA_1133
Organism: Heterodera glycines Gene Locus: chr1:13105653-13107429 Feature type: polypeptideProtein Sequence
Length: 154
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.453 | 0.59 | 1.12 | 1.623 | 1.332 | 0.387 | 0.974 | 0.722 | 1.316 | 0.394 | 2.292 | 1.263 | 0.874 | 1.458 | 1.577 | 1.171 | 0.885 | 0.5 | 0.573 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1080
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.797
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — |
7-31
|
0.971
|
— | — |
0.000
|
— | — |
0.806
|
0.321
|
0.006
|
0.580
|
0.079
|
0.167
|
0.135
|
0.021
|
0.120
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005905
|
1.000
|
1.000
|
Hsc_gene_21222.t2
|
Hsc_gene_21222.t2
|
— | — |
KAI1705429.1 GSK3-beta interaction protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0060828
|
GO:0008150_0.935|GO:0005575_0.908|GO:0110165_0.897|GO:0009987_0.885|GO:0065007_0.862|GO:0050789_0.852|GO:0050794_0.829|GO:0003674_0.824|GO:0005622_0.821|GO:0016020_0.809|GO:0050896_0.809|GO:0005488_0.794|GO:0051716_0.785|GO:0005515_0.784|GO:0005737_0.766|GO:0023052_0.765|GO:0048518_0.758|GO:0008152_0.757|GO:0007154_0.756|GO:0043226_0.755|GO:0007165_0.747|GO:0048522_0.746|GO:0044238_0.743|GO:0043170_0.740|GO:0044237_0.739|GO:0048519_0.736|GO:0043229_0.732|GO:0019222_0.730|GO:0048523_0.726|GO:0019538_0.724|GO:0031323_0.723|GO:0060255_0.717|GO:0080090_0.715|GO:0010646_0.714|GO:0023051_0.714|GO:0043227_0.711|GO:0048583_0.710|GO:0009966_0.706|GO:0007166_0.698|GO:0008219_0.698|GO:0012501_0.698|GO:0036211_0.698|GO:0043412_0.698|GO:0035556_0.696|GO:0043231_0.695|GO:0006915_0.694|GO:0010647_0.694|GO:0051246_0.694|GO:0065009_0.694|GO:0023056_0.693|GO:0098772_0.691|GO:0003824_0.690|GO:0006793_0.690|GO:0006796_0.690|GO:0009892_0.690|GO:0050790_0.690|GO:0048584_0.689|GO:0009967_0.686|GO:0031324_0.685|GO:0010605_0.684|GO:0031399_0.682|GO:0019899_0.681|GO:0016310_0.679|GO:0019220_0.679|GO:0042325_0.679|GO:0051174_0.679|GO:0001932_0.678|GO:0006468_0.678|GO:0044092_0.677|GO:0051248_0.677|GO:0097190_0.677|GO:0010563_0.675|GO:0016740_0.675|GO:0042326_0.675|GO:0043086_0.675|GO:0045936_0.675|GO:0051338_0.675|GO:0004672_0.674|GO:0016301_0.674|GO:0016772_0.674|GO:0016773_0.674|GO:0031400_0.674|GO:0043549_0.674|GO:0045859_0.674|GO:0140096_0.674|GO:0001933_0.670|GO:0006469_0.670|GO:0008631_0.670|GO:0016055_0.670|GO:0030111_0.670|GO:0030177_0.670|GO:0033673_0.670|GO:0051348_0.670|GO:0060070_0.670|GO:0060828_0.670|GO:0090263_0.670|GO:0097193_0.670|GO:0030234_0.667|GO:0140678_0.658|GO:0004857_0.656|GO:0019900_0.656|GO:0019207_0.654|GO:0019901_0.654|GO:0004860_0.650|GO:0019210_0.650|GO:0019887_0.650|GO:0034237_0.650|GO:0051018_0.650|GO:0005634_0.605
|
IPR007967+35-129+|IPR023231+8-130_33-134+|IPR037395+28-127+
|
— |
PF05303+35-129+GSKIP_domain
|
G3DSA:3.30.2280.10:FF:000004+33-136+Protein_CBG05668
|
PTHR12490+28-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-154
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
17256.600
|
4.997
|
-3.500
|
24.675
|
9.091
|
50.000
|
50.000
|
11.688
|
12.987
|
49.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
purple
|
902.225
|
229.418
|
849.156
|
1203.293
|
619.577
|
452.848
|
699.308
|
1566.948
|
171.714
|
1710.746
|
1051.161
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.658
|
2.254
|
0.612
|
-0.990
|
-0.438
|
0.637
|
1.689
|
-1.023
|
-3.423
|
— | — | — | — |
No JSON data available for plots.