Hg_chrom1_TN10mRNA_1135
Organism: Heterodera glycines Gene Locus: chr1:13110577-13114460 Feature type: polypeptideProtein Sequence
Length: 855
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.265 | 0.598 | 0.829 | 0.928 | 1.462 | 1.14 | 0.696 | 1.111 | 0.572 | 1.565 | 0.709 | 0.826 | 1.202 | 1.125 | 1.647 | 1.303 | 0.537 | 0.709 | 1.26 | 0.241 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1082
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RRMDLKLGSQLGKQIRR,GRRRLGKTEKGRRHAGEAVLRR
|
74-103
|
0.973
|
— | — | — | — |
0.000
|
— | — |
0.692
|
0.167
|
0.096
|
0.518
|
0.081
|
0.096
|
0.202
|
0.095
|
0.142
|
0.150
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005907
|
1.000
|
1.000
|
Hsc_gene_21224.t1
|
Hsc_gene_21224.t1
|
— | — |
KAI1701388.1 putative E3 ubiquitin-protein ligase [Ditylenchus destructor]
|
No
|
-0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001841+569-617+|IPR013083+581-626+|IPR017907+586-595+
|
— | — | — |
PTHR31063+566-712+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
228-279
|
2.000
|
1-227;280-855
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
94819.610
|
6.881
|
4.500
|
28.304
|
9.006
|
47.719
|
52.281
|
14.971
|
13.333
|
49.474
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
5871.972
|
7687.649
|
11567.938
|
3347.722
|
1941.759
|
3210.904
|
2373.571
|
28388.794
|
1948.401
|
2284.201
|
2140.287
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.361
|
-1.337
|
-1.681
|
-0.817
|
0.739
|
-0.426
|
3.042
|
-3.439
|
— | — | — | — | — |
No JSON data available for plots.