Hg_chrom1_TN10mRNA_1137
Organism: Heterodera glycines Gene Locus: chr1:13132158-13133003 Feature type: polypeptideProtein Sequence
Length: 137
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.103 | 0.849 | 0.664 | 0.0 | 0.973 | 1.684 | 1.043 | 0.73 | 1.298 | 0.986 | 1.88 | 0.429 | 0.608 | 0.702 | 2.234 | 0.417 | 0.957 | 0.995 | 0.0 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1084
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
4G06|MT0123311#tn8canujg17452t1
|
Hsc_gene_15525;Hsc_gene_15528
|
— | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRRYVNVAAAGPGRRRGP,HGSLARAGKVRAQTPKVEKQEKKKKKRGRAFRRIQYKRRYVNVAAAGPGRRRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.638
|
0.071
|
0.048
|
0.469
|
0.216
|
0.055
|
0.035
|
0.004
|
0.047
|
0.086
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005909
|
1.000
|
1.000
|
Hsc_gene_21227.t1
|
Hsc_gene_12320.t1;Hsc_gene_12320.t2;Hsc_gene_15525.t1;Hsc_gene_15528.t1;Hsc_gene_18450.t1;Hsc_gene_18450.t2;Hsc_gene_20056.t1;Hsc_gene_20056.t2;Hsc_gene_20056.t3;Hsc_gene_21227.t1
|
F25B5.4;ZK1010.1
|
P49632.2 Ubiquitin-ribosomal protein eL40 fusion protein [Caenorhabditis elegans]
|
KAI1705779.1 ubiquitin family domain-containing protein [Ditylenchus destructor];KAI1713371.1 ubiquitin family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005515|GO:0005840|GO:0006412
|
GO:0005575_0.910|GO:0110165_0.901|GO:0005622_0.859|GO:0043226_0.785|GO:0043229_0.779|GO:0016020_0.683|GO:0005737_0.682|GO:0003674_0.619|GO:0043227_0.617|GO:0043231_0.605|GO:0043228_0.592|GO:0043232_0.583|GO:0005829_0.526|GO:0005840_0.507
|
IPR000626+1-72_1-76_3-74+|IPR006846+77-135+|IPR019954+27-52+|IPR019956+11-31_32-52_53-74+|IPR029071+1-77+|IPR050158+1-99+
|
SM00213+1-72+
|
PF00240+3-74+Ubiquitin_family|PF04758+77-135+Ribosomal_protein_S30
|
G3DSA:3.10.20.90:FF:000016+1-76+Polyubiquitin_3
|
PTHR10666+1-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
77-137
|
1.000
|
1-76
|
9cai_Cm
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
15388.830
|
11.451
|
20.000
|
34.307
|
5.839
|
53.285
|
46.715
|
24.818
|
9.489
|
44.526
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
8046.224
|
2894.470
|
5294.900
|
7813.032
|
8006.861
|
7078.242
|
5731.133
|
3508.923
|
14584.323
|
9141.152
|
11473.940
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.642
|
1.295
|
0.669
|
— |
-0.163
|
-0.294
|
-1.119
|
0.852
|
— | — | — | — | — |
No JSON data available for plots.