Hg_chrom1_TN10mRNA_1138
Organism: Heterodera glycines Gene Locus: chr1:13133149-13136121 Feature type: polypeptideProtein Sequence
Length: 478
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.851 | 1.411 | 0.951 | 0.505 | 1.43 | 1.341 | 0.423 | 1.046 | 1.348 | 1.385 | 0.507 | 1.6 | 1.104 | 0.724 | 1.153 | 1.285 | 1.097 | 0.729 | 1.609 | 0.615 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1085
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.503
|
0.267
|
0.003
|
0.536
|
0.283
|
0.256
|
0.327
|
0.193
|
0.082
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005910
|
1.000
|
1.000
|
Hsc_gene_21228.t1
|
Hsc_gene_21228.t1;Hsc_gene_21229.t1
|
— |
Q9W689.1 Ataxin-3 [Gallus gallus]
|
KAI3422427.1 ataxin 3-like [Globodera pallida]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004843|GO:0016579
|
GO:0008150_0.919|GO:0005575_0.830|GO:0110165_0.826|GO:0003674_0.784|GO:0005622_0.730|GO:0016020_0.683|GO:0005737_0.662|GO:0009987_0.617|GO:0008152_0.591|GO:0044238_0.584|GO:0043170_0.579|GO:0065007_0.569|GO:0019538_0.563|GO:0050789_0.555|GO:0043226_0.544|GO:0036211_0.539|GO:0043412_0.539|GO:0043229_0.526|GO:0003824_0.516|GO:0043227_0.516|GO:0016787_0.511|GO:0140096_0.505|GO:0043231_0.503
|
IPR006155+1-171_8-159_9-156+|IPR033865+3-290+
|
SM01246+8-159+
|
PF02099+9-156+Josephin
|
— |
PTHR14159+3-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
250-355
|
2.000
|
1-249;356-478
|
2jri_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.637
|
54350.180
|
4.639
|
-18.000
|
24.895
|
10.251
|
51.883
|
48.117
|
11.088
|
13.808
|
47.908
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
2300.510
|
2303.960
|
2383.146
|
1837.396
|
1935.445
|
1867.998
|
2136.840
|
2747.844
|
2263.093
|
2662.676
|
2491.426
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.181
|
-0.463
|
-0.267
|
— | — |
0.204
|
0.453
|
— | — | — | — | — | — |
No JSON data available for plots.