Hg_chrom1_TN10mRNA_1139
Organism: Heterodera glycines Gene Locus: chr1:13136007-13140476 Feature type: polypeptideProtein Sequence
Length: 660
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.075 | 1.128 | 0.771 | 0.313 | 2.02 | 1.282 | 0.613 | 1.061 | 0.808 | 0.799 | 1.24 | 0.891 | 0.673 | 0.466 | 2.628 | 1.407 | 0.77 | 0.436 | 0.583 | 0.357 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1086
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.664
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KRKL,KRKR,RKRR,RRRSNSPENAWERKDHR,RRSSRSPPRRHRRRTTR,RRRTTRSRERERRRRSSR,RRHRRRTTRSRERERRRRS,REKKRREEQLLEESRLLRKREREKRKTDDGREKERRESEAHSSAGRRRRRSSSEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.908
|
0.049
|
0.006
|
0.145
|
0.038
|
0.012
|
0.036
|
0.020
|
0.051
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005911
|
1.000
|
1.000
|
Hsc_gene_21230.t1
|
— | — |
A0JNI5.1 CLK4-associating serine/arginine rich protein [Bos taurus]
|
KAF7638376.1 DRY_EERY domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.950|GO:0110165_0.947|GO:0005622_0.931|GO:0043226_0.906|GO:0043229_0.892|GO:0016020_0.882|GO:0005634_0.823|GO:0043227_0.823|GO:0043231_0.823|GO:0031974_0.768|GO:0031981_0.768|GO:0043233_0.768|GO:0070013_0.768|GO:0005654_0.677
|
IPR019147+39-181_40-179+|IPR040397+6-657+
|
SM01141+39-181+
|
PF09750+40-179+Alternative_splicing_regulator
|
— |
PTHR13161+6-657+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-72;176-222;305-660
|
2.000
|
73-175;223-304
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
75725.080
|
10.484
|
38.000
|
39.545
|
6.515
|
63.939
|
36.061
|
23.182
|
16.364
|
44.242
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3049.991
|
6400.143
|
3670.538
|
3095.171
|
2554.604
|
2034.537
|
2192.782
|
2568.993
|
3654.329
|
2159.174
|
2799.955
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.032
|
-1.185
|
-0.137
|
-0.309
|
-0.314
|
— |
0.230
|
— | — | — | — | — | — |
No JSON data available for plots.