Hg_chrom1_TN10mRNA_114
Organism: Heterodera glycines Gene Locus: chr1:779276-780938 Feature type: polypeptideProtein Sequence
Length: 107
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.869 | 0.435 | 0.17 | 0.0 | 0.623 | 0.0 | 0.779 | 3.738 | 0.831 | 1.516 | 0.566 | 1.1 | 2.336 | 2.336 | 1.335 | 1.736 | 1.226 | 0.425 | 0.0 | 0.55 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_110
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — |
6-28
|
0.996
|
— | — |
0.000
|
— | — |
0.444
|
0.378
|
0.348
|
0.282
|
0.122
|
0.038
|
0.022
|
0.145
|
0.106
|
0.337
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000054
|
2.000
|
20.000
|
Hsc_gene_14559.t1;Hsc_gene_14559.t2;Hsc_gene_14559.t3;Hsc_gene_14559.t4;Hsc_gene_17258.t1;Hsc_gene_17259.t1;Hsc_gene_23670.t1;Hsc_gene_23670.t2;Hsc_gene_23670.t3;Hsc_gene_23670.t4;Hsc_gene_23670.t5;Hsc_gene_23954.t1;Hsc_gene_23954.t2;Hsc_gene_24050.t1;Hsc_gene_3583.t1;Hsc_gene_3583.t2;Hsc_gene_3583.t3;Hsc_gene_3583.t4;Hsc_gene_3583.t5;Hsc_gene_3583.t6
|
— | — | — | — |
WP_073358193
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-107
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
11773.550
|
11.184
|
10.000
|
22.430
|
17.757
|
43.925
|
56.075
|
17.757
|
4.673
|
51.402
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
8.113
|
30.579
|
16.638
|
10.311
|
2.501
|
4.379
|
1.421
|
6.059
|
10.633
|
0.560
|
4.877
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.112
|
-1.704
|
— |
-2.062
|
— | — | — |
-1.957
|
— | — | — | — | — |
No JSON data available for plots.