Hg_chrom1_TN10mRNA_1140
Organism: Heterodera glycines Gene Locus: chr1:13140496-13141770 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 0.944 | 0.671 | 0.254 | 0.8 | 0.852 | 0.791 | 1.292 | 1.558 | 1.147 | 1.454 | 1.302 | 1.23 | 0.993 | 1.506 | 1.107 | 1.089 | 1.006 | 0.0 | 0.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1087
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.784
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RPKKIRR,KRAIIYTSCRKEGFKNTKK
|
1-21
|
0.942
|
8-33
|
0.963
|
— | — |
0.000
|
— | — |
0.110
|
0.938
|
0.054
|
0.112
|
0.016
|
0.013
|
0.031
|
0.009
|
0.045
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005912
|
1.000
|
1.000
|
Hsc_gene_21231.t1
|
Hsc_gene_21231.t1;Hsc_gene_21231.t2
|
— |
P82911.2 Small ribosomal subunit protein uS11m [Bos taurus]
|
KAI6191893.1 28S ribosomal protein S11, mitochondrial [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.939|GO:0110165_0.935|GO:0016020_0.876|GO:0005622_0.822|GO:0043226_0.791|GO:0043229_0.786|GO:0043227_0.729|GO:0005737_0.721|GO:0043231_0.720
|
IPR001971+78-271_100-270_161-270+|IPR036967+145-271+
|
— |
PF00411+161-270+Ribosomal_protein_S11
|
— |
PTHR11759+100-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
41-97;266-271
|
2.000
|
1-40;98-265
|
6nf8_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.576
|
29893.810
|
11.107
|
26.500
|
28.044
|
7.749
|
49.815
|
50.185
|
19.557
|
8.487
|
49.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1091.554
|
832.932
|
1159.892
|
1430.492
|
1521.069
|
1305.985
|
1584.220
|
1227.285
|
286.271
|
1162.645
|
787.056
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.247
|
0.643
|
0.412
|
— |
-0.205
|
0.289
|
-0.195
|
0.511
|
-2.139
|
2.503
|
— | — | — |
No JSON data available for plots.