Hg_chrom1_TN10mRNA_1141
Organism: Heterodera glycines Gene Locus: chr1:13144380-13148684 Feature type: polypeptideProtein Sequence
Length: 727
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.88 | 0.768 | 1.25 | 1.091 | 1.123 | 0.988 | 0.802 | 1.444 | 0.917 | 1.097 | 0.959 | 1.618 | 1.643 | 0.952 | 1.235 | 0.806 | 0.767 | 1.063 | 0.952 | 0.607 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1088
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
RKGTDEVYAVKVLKK,RKVKPPFKPRIRSKRD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.441
|
0.148
|
0.015
|
0.642
|
0.118
|
0.430
|
0.248
|
0.015
|
0.465
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005913
|
1.000
|
1.000
|
Hsc_gene_21232.t1
|
Hsc_gene_21232.t1
|
— |
P34885.2 Protein kinase C-like 1B [Caenorhabditis elegans]
|
KAI3422423.1 Serine/threonine kinase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0004697|GO:0005524|GO:0006468
|
GO:0008150_0.987|GO:0065007_0.976|GO:0009987_0.967|GO:0050789_0.945|GO:0050794_0.938|GO:0050896_0.886|GO:0003674_0.879|GO:0003824_0.879|GO:0004672_0.879|GO:0016301_0.879|GO:0016740_0.879|GO:0016772_0.879|GO:0016773_0.879|GO:0140096_0.879|GO:0004674_0.857|GO:0005575_0.856|GO:0110165_0.854|GO:0007154_0.821|GO:0023052_0.819|GO:0005622_0.805|GO:0032501_0.782|GO:0048518_0.774|GO:0051716_0.774|GO:0007165_0.767|GO:0048522_0.695|GO:0071944_0.672|GO:0032502_0.668|GO:0071840_0.661|GO:0016043_0.657|GO:0048856_0.654|GO:0016020_0.652|GO:0023051_0.647|GO:0010646_0.646|GO:0048519_0.641|GO:0005886_0.629|GO:0048583_0.620|GO:0005737_0.614|GO:0032879_0.610|GO:0051179_0.610|GO:0008152_0.602|GO:0019538_0.602|GO:0043170_0.602|GO:0044238_0.602|GO:0036211_0.601|GO:0043412_0.601|GO:0006793_0.590|GO:0006796_0.590|GO:0044237_0.590|GO:0005488_0.582|GO:0016310_0.579|GO:0006468_0.569|GO:0006810_0.559|GO:0051234_0.559|GO:0051049_0.556|GO:0035556_0.548|GO:0048523_0.545|GO:0042221_0.542|GO:0030054_0.531|GO:0005515_0.529|GO:0007275_0.519|GO:0006996_0.514
|
IPR000008+1-115_7-114_7-117+|IPR000719+394-654_395-640+|IPR000961+655-718_655-726+|IPR002219+171-222_172-222_172-223_250-300_251-300_251-302+|IPR008271+514-526+|IPR011009+390-717+|IPR014376+2-726+|IPR017441+400-423+|IPR017892+675-716+|IPR020454+169-183_185-194_199-210_289-301+|IPR034669+398-718+|IPR035892+1-134_3-130+|IPR046349+157-224_244-303+|IPR050236+168-717+
|
SM00109+172-222_251-300+|SM00133+655-718+|SM00220+394-654+|SM00239+7-114+
|
PF00069+395-640+Protein_kinase_domain|PF00130+172-223_251-302+Phorbol_esters/diacylglycerol_binding_domain_(C1_domain)|PF00168+7-117+C2_domain|PF00433+675-716+Protein_kinase_C_terminal_domain
|
G3DSA:1.10.510.10:FF:000126+478-685+Protein_kinase_C_epsilon|G3DSA:3.30.200.20:FF:000080+383-507+Protein_kinase_C|G3DSA:3.30.60.20:FF:000003+247-312+Protein_kinase_C_delta|G3DSA:3.30.60.20:FF:000063+158-239+Protein_kinase_C
|
PTHR24356+168-717+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
322-380
|
2.000
|
1-321;381-727
|
8fp3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
81857.480
|
6.611
|
1.500
|
28.886
|
12.105
|
46.355
|
53.645
|
15.268
|
13.618
|
49.931
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
2490.094
|
3274.103
|
5427.106
|
2108.088
|
663.153
|
1602.704
|
1376.086
|
6481.470
|
1900.717
|
1618.855
|
1739.653
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
-0.772
|
-1.256
|
-1.700
|
1.287
|
-0.209
|
1.916
|
-2.094
|
— | — | — | — | — |
No JSON data available for plots.