Hg_chrom1_TN10mRNA_1143
Organism: Heterodera glycines Gene Locus: chr1:13151484-13154000 Feature type: polypeptideProtein Sequence
Length: 570
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 0.857 | 0.861 | 1.089 | 1.345 | 1.754 | 0.459 | 1.228 | 0.858 | 0.901 | 1.196 | 2.167 | 0.926 | 1.35 | 1.325 | 1.253 | 0.661 | 0.691 | 0.81 | 0.826 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1090
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PKRRKGRPPNKKA,RREHGFNSPRRRHGKCRRH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.982
|
0.047
|
0.055
|
0.183
|
0.033
|
0.012
|
0.010
|
0.008
|
0.037
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005915
|
1.000
|
1.000
|
Hsc_gene_21235.t1
|
Hsc_gene_21234.t1;Hsc_gene_21235.t1
|
— |
Q8WUB8.3 PHD finger protein 10 [Homo sapiens]
|
KAI1719844.1 PHD-finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.901|GO:0005575_0.813|GO:0110165_0.813|GO:0005622_0.768|GO:0043226_0.710|GO:0016020_0.704|GO:0043229_0.696|GO:0009987_0.672|GO:0043227_0.645|GO:0043231_0.618|GO:0005634_0.601|GO:0065007_0.533|GO:0050789_0.521|GO:0032502_0.504|GO:0048856_0.504
|
IPR001841+411-463_466-508+|IPR001965+410-464_465-509+|IPR011011+404-466_455-510+|IPR013083+374-463_464-531+|IPR019787+408-466_411-463_463-511_466-508+
|
SM00184+411-463_466-508+|SM00249+410-464_465-509+
|
PF00628+411-463_466-508+PHD-finger
|
— |
PTHR45888+239-509+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-87;306-415;521-570
|
2.000
|
88-305;416-520
|
5szc_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.814
|
65090.040
|
8.385
|
16.000
|
29.649
|
9.649
|
52.982
|
47.018
|
16.842
|
12.807
|
46.842
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1274.255
|
1621.030
|
1219.766
|
1070.205
|
1017.643
|
811.008
|
1254.283
|
999.640
|
1285.232
|
1613.352
|
1472.729
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.640
|
-0.736
|
— |
-0.105
|
-0.313
|
0.640
|
— |
0.469
|
— | — | — | — | — |
No JSON data available for plots.