SCN Proteipedia

Hg_chrom1_TN10mRNA_1146

Organism: Heterodera glycines Gene Locus: chr1:13163215-13169821 Feature type: polypeptide

Protein Sequence

Length: 719

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.035	1.003	0.531	0.24	1.739	1.712	1.027	1.252	0.464	1.053	1.159	1.309	0.734	1.337	0.823	1.411	1.277	0.485	0.0	0.205	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_1092	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRK,RKSEVNEKEQKKGER,KGQRRAKEREDKEEKKP,KRPAEREQNDDQQQKGQRR	—	—	—	—	—	—	0.000	—	—	0.863	0.123	0.040	0.366	0.056	0.028	0.057	0.021	0.052	0.082

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001074	2.000	3.000	Hsc_gene_21239.t1;Hsc_gene_21239.t2;Hsc_gene_21239.t3	Hsc_gene_21239.t2	—	Q18955.1 Serum response factor homolog [Caenorhabditis elegans]	KAH7730303.1 Serum response factor [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000981\|GO:0000987\|GO:0003677\|GO:0045944\|GO:0046983	GO:0008150_0.944\|GO:0065007_0.835\|GO:0050789_0.823\|GO:0005575_0.791\|GO:0110165_0.775\|GO:0009987_0.747\|GO:0032502_0.735\|GO:0005622_0.726\|GO:0048856_0.704\|GO:0050794_0.701\|GO:0043226_0.673\|GO:0016020_0.661\|GO:0043229_0.650\|GO:0003674_0.624\|GO:0005488_0.624\|GO:0048518_0.609\|GO:0043227_0.568\|GO:0032501_0.562\|GO:0043231_0.536\|GO:0007275_0.534\|GO:0008152_0.520\|GO:0019222_0.520\|GO:0031323_0.511\|GO:0044237_0.511\|GO:0048731_0.505\|GO:0003676_0.503\|GO:0043170_0.503\|GO:0060255_0.503\|GO:0097159_0.503	IPR002100+157-216_157-217_159-179_159-213_166-213_179-194_194-215+\|IPR033897+158-239+\|IPR036879+157-222_169-239+\|IPR050142+158-465+	SM00432+157-216+	PF00319+166-213+SRF-type_transcription_factor_(DNA-binding_and_dimerisation_domain)	G3DSA:3.40.1810.10:FF:000002+169-239+Serum_response_factor_b	PTHR48019+158-465+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-162;246-719	1.000	163-245	1k6o_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.820	77181.490	6.255	-3.000	27.538	5.841	56.189	43.811	14.186	13.352	53.268

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	484.191	1024.494	740.134	598.067	405.801	309.730	398.257	681.227	162.308	437.461	319.539

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.699	-0.914	-0.198	-0.591	-0.375	0.373	1.033	-0.632	—	—	—	—	—

No JSON data available for plots.

Back to Browser