Hg_chrom1_TN10mRNA_1149
Organism: Heterodera glycines Gene Locus: chr1:13177734-13178853 Feature type: polypeptideProtein Sequence
Length: 126
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 1.107 | 0.289 | 0.0 | 0.794 | 2.239 | 0.661 | 2.381 | 1.587 | 0.858 | 0.962 | 1.867 | 1.984 | 0.916 | 1.62 | 0.794 | 1.041 | 0.962 | 0.611 | 0.7 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1095
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
33-55
|
0.972
|
— | — | — | — |
0.000
|
— | — |
0.305
|
0.938
|
0.021
|
0.145
|
0.011
|
0.011
|
0.006
|
0.023
|
0.046
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005918
|
1.000
|
1.000
|
Hsc_gene_21241.t1
|
Hsc_gene_21241.t1
|
— | — |
KAI6185337.1 RRM domain-containing protein [Aphelenchoides besseyi];KAI6199163.1 RRM domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.777|GO:0110165_0.768|GO:0008150_0.767|GO:0003674_0.710|GO:0005488_0.674|GO:0005622_0.664|GO:0043226_0.607|GO:0016020_0.591|GO:0043229_0.579|GO:0097159_0.571|GO:0003676_0.556|GO:0043227_0.539|GO:0043231_0.530|GO:0003723_0.517
|
IPR000504+41-118_42-114_54-104+|IPR012677+15-126+|IPR035979+44-124+|IPR053260+46-120+
|
SM00360+42-114+
|
PF00076+54-104+RNA_recognition_motif
|
— |
PTHR48035+46-120+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
106-126
|
1.000
|
1-105
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.497
|
14666.940
|
11.204
|
13.000
|
25.397
|
15.079
|
50.794
|
49.206
|
19.048
|
6.349
|
40.476
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
1220.031
|
2575.816
|
1584.378
|
963.236
|
894.132
|
879.621
|
758.532
|
1249.809
|
1275.922
|
1041.122
|
1141.751
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.930
|
-1.556
|
-0.610
|
-0.139
|
— |
-0.203
|
0.401
|
-0.577
|
— | — | — | — | — |
No JSON data available for plots.