Hg_chrom1_TN10mRNA_115
Organism: Heterodera glycines Gene Locus: chr1:785069-787618 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 0.81 | 0.452 | 0.6 | 0.58 | 3.636 | 0.888 | 2.363 | 0.884 | 1.042 | 0.075 | 1.756 | 0.829 | 2.248 | 1.523 | 0.782 | 0.979 | 0.829 | 1.148 | 0.219 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_111
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.803
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
12-32
|
0.998
|
42-100
|
0.785
|
— | — |
0.000
|
— | — |
0.654
|
0.251
|
0.003
|
0.628
|
0.115
|
0.017
|
0.040
|
0.032
|
0.065
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005582
|
1.000
|
1.000
|
Hsc_gene_15994.t1
|
— | — |
Q7TMV1.1 E3 ubiquitin-protein ligase RNF139 [Mus musculus]
|
XP_031575362.1 RING finger protein 145-like [Actinia tenebrosa]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.734|GO:0008150_0.732|GO:0110165_0.730|GO:0009987_0.682|GO:0005622_0.660|GO:0016020_0.633|GO:0043226_0.593|GO:0043229_0.572|GO:0043227_0.559|GO:0005737_0.538|GO:0043231_0.535|GO:0071944_0.516
|
IPR001841+337-378_337-379+|IPR013083+318-383+|IPR047126+100-382+
|
SM00184+337-378+
|
PF13639+337-379+Ring_finger_domain
|
— |
PTHR12109+100-382+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-323;400-402
|
1.000
|
324-399
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
44917.870
|
9.478
|
17.500
|
18.657
|
9.950
|
47.761
|
52.239
|
12.687
|
5.970
|
49.751
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
43.118
|
26.247
|
145.079
|
74.459
|
28.047
|
26.072
|
8.099
|
55.793
|
6.876
|
47.062
|
29.839
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.236
|
1.367
|
-0.852
|
-1.440
|
— |
-1.679
|
0.995
|
-2.646
|
— | — | — | — | — |
No JSON data available for plots.