Hg_chrom1_TN10mRNA_1150
Organism: Heterodera glycines Gene Locus: chr1:13180447-13182132 Feature type: polypeptideProtein Sequence
Length: 350
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 0.864 | 0.883 | 0.197 | 0.667 | 0.952 | 0.51 | 1.714 | 0.381 | 1.351 | 1.126 | 1.345 | 1.984 | 1.264 | 2.332 | 0.98 | 0.703 | 1.039 | 1.099 | 0.924 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1096
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
chloroplast
|
RWDKRYK,RRIPKMSRTEKRKLL,KRHRATAQSDNRARRI,KGRKRKRTDGRQKRHRATAQSDNRARR
|
— | — |
5-45
|
1.000
|
1-29
|
0.849
|
0.517
|
0.000
|
0.000
|
0.836
|
0.088
|
0.015
|
0.119
|
0.067
|
0.006
|
0.018
|
0.033
|
0.054
|
0.488
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005919
|
1.000
|
1.000
|
Hsc_gene_21242.t1
|
— | — | — |
KAI6190206.1 Hemopexin-like domain and Hemopexin-like repeat-containing protein [Aphelenchoides bicaudatus]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR036375+144-339_146-334+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-147
|
2.000
|
1-87;148-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
41096.510
|
11.273
|
41.000
|
31.143
|
15.143
|
49.714
|
50.286
|
22.286
|
8.857
|
44.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
red
|
338.699
|
81.049
|
46.787
|
58.713
|
368.539
|
1371.032
|
1070.010
|
216.625
|
44.956
|
243.308
|
158.300
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.025
|
-0.602
|
0.439
|
2.619
|
1.909
|
-0.347
|
-2.783
|
2.453
|
— | — | — | — |
-8.071
|