Hg_chrom1_TN10mRNA_1151
Organism: Heterodera glycines Gene Locus: chr1:13183328-13184683 Feature type: polypeptideProtein Sequence
Length: 201
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.694 | 0.926 | 1.176 | 2.402 | 0.58 | 0.765 | 0.592 | 1.244 | 0.774 | 1.277 | 0.905 | 0.878 | 2.626 | 0.861 | 0.609 | 0.924 | 0.897 | 0.829 | 1.531 | 1.756 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1097
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
— |
extracellular|cell_membrane
|
— | — | — | — | — | — | — |
0.646
|
0.469
|
1.000
|
— |
0.055
|
0.110
|
0.008
|
0.092
|
0.214
|
0.103
|
0.109
|
0.062
|
0.629
|
0.673
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003028
|
2.000
|
1.000
|
Hsc_gene_21243.t1
|
Hsc_gene_21243.t1
|
— |
P00593.2 Phospholipase A2 [Bos taurus]
|
NP_496228.1 Phospholipase A2 [Caenorhabditis elegans];CAA90098.1 Phospholipase A2 [Caenorhabditis elegans]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004623|GO:0005509|GO:0006644|GO:0016042|GO:0050482
|
GO:0008150_0.883|GO:0005575_0.830|GO:0110165_0.830|GO:0003674_0.814|GO:0009987_0.753|GO:0003824_0.648|GO:0016787_0.617|GO:0008152_0.595|GO:0016788_0.594|GO:0016298_0.585|GO:0052689_0.585|GO:0065007_0.584|GO:0004620_0.583|GO:0004623_0.579|GO:0044238_0.578|GO:0044237_0.572|GO:0050789_0.567|GO:0050896_0.553|GO:0006629_0.527|GO:0050794_0.526|GO:0044255_0.518|GO:0006793_0.504|GO:0006796_0.504
|
IPR001211+24-165_44-54_58-76_77-95_111-125_130-146+|IPR016090+43-149_43-163_44-149+|IPR033112+134-144+|IPR033113+84-91+|IPR036444+40-164_44-157+
|
SM00085+43-163+
|
PF00068+44-149+Phospholipase_A2
|
— |
PTHR11716+24-165+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
1gh4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
23171.640
|
6.592
|
0.500
|
21.393
|
19.900
|
40.299
|
59.701
|
11.443
|
9.950
|
50.249
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
552.119
|
366.100
|
400.658
|
389.450
|
376.967
|
389.239
|
323.360
|
410.596
|
146.772
|
1309.303
|
811.075
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-0.260
|
— | — |
-3.289
|
— | — | — | — |