Hg_chrom1_TN10mRNA_1158
Organism: Heterodera glycines Gene Locus: chr1:13216078-13218596 Feature type: polypeptideProtein Sequence
Length: 440
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.396 | 1.004 | 0.826 | 0.94 | 1.098 | 0.699 | 0.595 | 1.591 | 1.01 | 1.443 | 0.585 | 1.604 | 2.462 | 0.612 | 1.716 | 0.942 | 0.969 | 1.033 | 2.098 | 0.936 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1104
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRR,RNRKRHR,KRGEREEKEKKKNRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.031
|
0.078
|
0.008
|
0.108
|
0.425
|
0.263
|
0.258
|
0.009
|
0.488
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003030
|
1.000
|
2.000
|
Hsc_gene_21250.t1;Hsc_gene_21250.t2
|
— | — |
Q22549.1 Innexin-10 [Caenorhabditis elegans]
|
KAH7729790.1 CBN-INX-20 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.890|GO:0110165_0.890|GO:0008150_0.805|GO:0009987_0.674|GO:0030054_0.615|GO:0016020_0.536|GO:0003674_0.534|GO:0006810_0.522|GO:0051179_0.522|GO:0051234_0.522|GO:0005911_0.515|GO:0070161_0.515|GO:0071944_0.505
|
IPR000990+4-407_17-392_22-386_45-56_73-82_113-135_209-223_258-267_282-298+
|
— |
PF00876+22-386+Innexin
|
— |
PTHR11893+4-407+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
431-440
|
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.664
|
52109.050
|
8.229
|
12.000
|
26.591
|
17.955
|
46.136
|
53.864
|
15.455
|
11.136
|
42.500
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1052.152
|
271.223
|
403.428
|
101.285
|
72.013
|
193.308
|
63.994
|
373.426
|
2433.186
|
2223.771
|
2313.520
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.343
|
-1.558
|
-1.885
|
-0.524
|
1.439
|
-1.585
|
0.838
|
-2.400
|
— |
-4.432
|
-4.793
|
— | — |
No JSON data available for plots.