Hg_chrom1_TN10mRNA_1160
Organism: Heterodera glycines Gene Locus: chr1:13223530-13223855 Feature type: polypeptideProtein Sequence
Length: 90
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.517 | 0.775 | 1.818 | 0.0 | 1.296 | 0.57 | 0.926 | 2.778 | 0.741 | 0.901 | 0.168 | 4.575 | 1.235 | 0.427 | 2.041 | 0.952 | 0.729 | 1.01 | 1.709 | 0.98 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1106
|
— | — |
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
4.000
|
3.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.437
|
0.292
|
0.019
|
0.535
|
0.129
|
0.197
|
0.063
|
0.005
|
0.095
|
0.356
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P16591.2 Tyrosine-protein kinase Fer [Homo sapiens]
|
KAF7623530.1 Tyrosine-protein kinase, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.837|GO:0005575_0.814|GO:0110165_0.792|GO:0009987_0.719|GO:0003674_0.610|GO:0005622_0.602|GO:0065007_0.592|GO:0005488_0.585|GO:0050789_0.573|GO:0005515_0.542|GO:0005737_0.527|GO:0050794_0.506
|
IPR000980+10-81_12-66_12-85+|IPR035849+9-74+|IPR036860+1-86_5-70+
|
SM00252+10-81+
|
PF00017+12-66+SH2_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-90
|
7t1l_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
10562.800
|
5.102
|
-3.500
|
34.444
|
15.556
|
51.111
|
48.889
|
16.667
|
17.778
|
45.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
red
|
179.060
|
8.207
|
16.952
|
30.369
|
28.564
|
35.813
|
54.500
|
83.481
|
6.001
|
682.181
|
392.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.817
|
1.752
|
0.951
|
— | — |
0.618
|
1.114
|
-0.469
|
— | — | — | — | — |
No JSON data available for plots.