Hg_chrom1_TN10mRNA_1161
Organism: Heterodera glycines Gene Locus: chr1:13227442-13234221 Feature type: polypeptideProtein Sequence
Length: 1,150
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.87 | 0.708 | 0.98 | 0.81 | 1.275 | 1.048 | 0.611 | 1.174 | 0.986 | 1.481 | 1.054 | 1.023 | 1.618 | 0.936 | 1.579 | 1.031 | 0.713 | 0.711 | 1.003 | 0.716 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1107
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKKK,KRSR,RRKRKKRTMRRRKRRTN,GRRKRKKRTMRRRKRRT
|
— | — | — | — | — | — |
0.000
|
— | — |
0.602
|
0.084
|
0.091
|
0.297
|
0.157
|
0.048
|
0.134
|
0.067
|
0.104
|
0.227
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005925
|
1.000
|
1.000
|
Hsc_gene_21252.t1
|
Hsc_gene_21252.t1;Hsc_gene_21253.t1
|
— |
Q27474.2 DNA ligase 1 [Caenorhabditis elegans]
|
KAH7728234.1 DNA ligase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003712|GO:0003909|GO:0003910|GO:0005524|GO:0006281|GO:0006310|GO:0006355|GO:0016592|GO:0071897
|
GO:0008150_0.848|GO:0005575_0.803|GO:0110165_0.798|GO:0009987_0.769|GO:0005622_0.716|GO:0016020_0.672|GO:0008152_0.653|GO:0044238_0.650|GO:0043170_0.638|GO:0043226_0.633|GO:0003674_0.620|GO:0043229_0.605|GO:0050896_0.603|GO:0006139_0.597|GO:0090304_0.581|GO:0051716_0.578|GO:0043227_0.570|GO:0043231_0.538|GO:0006259_0.537|GO:0006950_0.515
|
IPR000977+78-622+|IPR008831+811-880+|IPR012308+20-196+|IPR012309+495-606+|IPR012310+266-470_372-508+|IPR012340+475-637_478-624+|IPR016059+290-298_444-470+|IPR021852+1013-1131+|IPR036599+3-268_8-256+|IPR038089+798-886+|IPR050191+17-638+
|
— |
PF01068+266-470+ATP_dependent_DNA_ligase_domain|PF04675+20-196+DNA_ligase_N_terminus|PF04679+495-606+ATP_dependent_DNA_ligase_C_terminal_region|PF05669+811-880+SOH1|PF11938+1013-1131+TLR4_regulator_and_MIR-interacting_MSAP
|
G3DSA:1.10.3260.10:FF:000001+2-268+DNA_ligase|G3DSA:2.40.50.140:FF:000062+475-634+DNA_ligase|G3DSA:3.30.470.30:FF:000002+295-420+DNA_ligase
|
PTHR45674+17-638+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
608-670
|
2.000
|
1-607;671-1150
|
7qnz_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
131602.930
|
8.698
|
32.500
|
30.087
|
11.913
|
48.783
|
51.217
|
17.043
|
13.043
|
44.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
3761.726
|
7406.289
|
2767.687
|
2711.262
|
3123.076
|
2965.247
|
3748.462
|
3898.490
|
2713.160
|
4439.990
|
3699.920
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.651
|
-1.587
|
— |
0.172
|
— |
0.349
|
0.292
|
— | — | — | — | — | — |
No JSON data available for plots.