Hg_chrom1_TN10mRNA_1162
Organism: Heterodera glycines Gene Locus: chr1:13234717-13235590 Feature type: polypeptideProtein Sequence
Length: 110
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.951 | 1.057 | 1.322 | 0.94 | 0.758 | 1.399 | 0.541 | 0.455 | 1.01 | 0.86 | 1.102 | 3.209 | 1.515 | 0.175 | 1.484 | 0.779 | 1.49 | 0.964 | 0.699 | 0.802 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1108
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.969
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.706
|
0.163
|
0.011
|
0.325
|
0.070
|
0.355
|
0.125
|
0.001
|
0.135
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005926
|
1.000
|
1.000
|
Hsc_gene_21254.t1
|
Hsc_gene_21254.t1
|
— |
Q9NEX2.2 Transcription initiation factor IIA subunit 2 [Caenorhabditis elegans]
|
KAI3422399.1 Gtf2a2p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005672|GO:0006367
|
GO:0005575_0.681|GO:0110165_0.666|GO:0008150_0.663|GO:0005622_0.596|GO:0009987_0.594|GO:0003674_0.577|GO:0005488_0.553|GO:0043226_0.536|GO:0043229_0.531|GO:0016020_0.530|GO:0008152_0.506|GO:0005515_0.504
|
IPR003194+1-109_2-106+|IPR009083+2-53+|IPR009088+52-103_54-109+|IPR015871+56-104_62-103+|IPR015872+3-48_3-50+
|
— |
PF02268+3-48+Transcription_initiation_factor_IIA,_gamma_subunit,_helical_domain|PF02751+62-103+Transcription_initiation_factor_IIA,_gamma_subunit
|
G3DSA:1.10.287.190:FF:000001+2-53+Transcription_initiation_factor_IIA_subunit_2
|
PTHR10966+2-106+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
8was_O
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
12598.460
|
8.722
|
3.500
|
27.273
|
10.000
|
51.818
|
48.182
|
15.455
|
11.818
|
49.091
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
lightgreen
|
523.534
|
541.982
|
494.709
|
562.792
|
656.788
|
578.536
|
687.433
|
776.851
|
192.216
|
534.138
|
387.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.362
|
— |
0.295
|
0.190
|
— |
0.259
|
0.320
|
— | — | — | — | — | — |
No JSON data available for plots.