Hg_chrom1_TN10mRNA_1163
Organism: Heterodera glycines Gene Locus: chr1:13235791-13238014 Feature type: polypeptideProtein Sequence
Length: 420
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.163 | 1.163 | 1.645 | 0.903 | 1.23 | 0.488 | 0.935 | 1.667 | 1.323 | 1.062 | 0.433 | 0.7 | 1.124 | 0.458 | 0.826 | 1.463 | 0.859 | 0.794 | 2.198 | 0.28 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1109
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.866
|
0.101
|
0.003
|
0.538
|
0.031
|
0.038
|
0.046
|
0.007
|
0.039
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005927
|
1.000
|
1.000
|
Hsc_gene_21255.t1
|
Hsc_gene_21255.t1
|
— |
Q6BRG6.2 Ribosome biogenesis protein ERB1 [Debaryomyces hansenii CBS767]
|
KAI1717108.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.842|GO:0005575_0.779|GO:0110165_0.749|GO:0009987_0.675|GO:0005622_0.619|GO:0043226_0.531|GO:0003674_0.520|GO:0016020_0.520|GO:0043229_0.517
|
IPR001680+35-74_41-74_42-76_81-120_270-319_322-364_330-364_351-373_367-409+|IPR015943+34-412+|IPR019775+61-75+|IPR036322+41-408+|IPR051179+11-410+
|
SM00320+35-74_81-120_270-319_322-364_367-409+
|
PF00400+41-74_330-364+WD_domain,_G-beta_repeat
|
— |
PTHR19857+11-410+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-35
|
1.000
|
36-420
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.816
|
45660.220
|
4.214
|
-33.000
|
26.667
|
11.190
|
49.048
|
50.952
|
10.238
|
16.429
|
57.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkturquoise
|
917.493
|
1193.424
|
803.039
|
1175.722
|
1215.933
|
973.772
|
1046.404
|
788.896
|
815.471
|
703.484
|
751.478
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.802
|
-0.159
|
0.659
|
— |
-0.305
|
— |
-0.410
|
0.551
|
— | — | — | — | — |
No JSON data available for plots.