Hg_chrom1_TN10mRNA_1165
Organism: Heterodera glycines Gene Locus: chr1:13241624-13250166 Feature type: polypeptideProtein Sequence
Length: 821
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 0.85 | 0.376 | 1.05 | 0.284 | 0.906 | 0.624 | 1.644 | 1.57 | 1.728 | 0.461 | 1.29 | 1.827 | 1.897 | 1.367 | 1.479 | 0.699 | 0.794 | 1.124 | 0.502 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1111
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRRR,RRNGKSSMAIKRFAR
|
9-38
|
0.996
|
19-59
|
0.980
|
— | — |
0.000
|
— | — |
0.159
|
0.062
|
0.021
|
0.149
|
0.323
|
0.161
|
0.133
|
0.050
|
0.723
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005929
|
1.000
|
1.000
|
Hsc_gene_21257.t1
|
Hsc_gene_21257.t1
|
— |
Q20929.1 G-protein coupled receptor dmsr-1 [Caenorhabditis elegans]
|
KAI1723832.1 serpentine type 7TM GPCR chemoreceptor srw domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008528|GO:0016020
|
GO:0008150_0.968|GO:0009987_0.937|GO:0065007_0.912|GO:0050789_0.895|GO:0050794_0.875|GO:0005575_0.860|GO:0110165_0.858|GO:0050896_0.841|GO:0016020_0.834|GO:0023052_0.827|GO:0051716_0.826|GO:0007154_0.822|GO:0007165_0.793|GO:0071944_0.792|GO:0005886_0.784|GO:0003674_0.768|GO:0032501_0.728|GO:0007186_0.718|GO:0060089_0.669|GO:0038023_0.663|GO:0004888_0.659|GO:0005488_0.652|GO:0051239_0.613|GO:0007610_0.576|GO:0004930_0.569|GO:0050795_0.559|GO:0042277_0.553|GO:0001653_0.548|GO:0008528_0.546
|
IPR017452+402-721+|IPR019427+393-619_655-736+|IPR053219+354-736+
|
— |
PF10324+393-619_655-736+Serpentine_type_7TM_GPCR_chemoreceptor_Srw
|
— |
PTHR46273+354-736+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-821
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.877
|
91417.730
|
10.702
|
62.500
|
16.809
|
13.033
|
38.611
|
61.389
|
13.033
|
3.776
|
49.939
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
558.182
|
588.741
|
1019.792
|
554.202
|
190.854
|
398.895
|
179.886
|
2054.055
|
236.729
|
394.588
|
326.934
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
-0.225
|
-0.771
|
-1.569
|
1.077
|
-1.141
|
2.264
|
-3.375
|
— | — | — | — | — |
No JSON data available for plots.