Hg_chrom1_TN10mRNA_1166
Organism: Heterodera glycines Gene Locus: chr1:13251596-13254386 Feature type: polypeptideProtein Sequence
Length: 473
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.615 | 1.032 | 0.846 | 0.292 | 0.916 | 0.651 | 0.956 | 1.586 | 1.222 | 1.371 | 0.641 | 1.368 | 2.584 | 1.138 | 1.165 | 1.057 | 0.52 | 0.961 | 1.464 | 1.057 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1112
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.198
|
0.218
|
0.025
|
0.289
|
0.907
|
0.533
|
0.544
|
0.010
|
0.172
|
0.189
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005930
|
1.000
|
1.000
|
Hsc_gene_21258.t1
|
Hsc_gene_21258.t1;Hsc_gene_21258.t2
|
— |
P07099.1 Epoxide hydrolase 1 [Homo sapiens]
|
KAH7730307.1 Protein W01A11.1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0016803
|
GO:0008150_0.944|GO:0003674_0.876|GO:0050896_0.721|GO:0005575_0.682|GO:0110165_0.682|GO:0042221_0.661|GO:0009987_0.652|GO:0016020_0.631|GO:0008152_0.587|GO:0005622_0.577|GO:0003824_0.571|GO:0043226_0.539|GO:0043227_0.531|GO:0043229_0.531|GO:0043231_0.520|GO:0044281_0.513
|
IPR000639+162-180_241-254_255-268_412-428_444-466+|IPR010497+60-171+|IPR016292+40-471+|IPR029058+51-471_55-468+
|
— |
PF06441+60-171+Epoxide_hydrolase_N_terminus
|
— |
PTHR21661+21-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-473
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
54036.030
|
7.383
|
6.500
|
23.256
|
17.970
|
40.803
|
59.197
|
13.108
|
10.148
|
46.089
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1895.814
|
3613.525
|
2741.909
|
1656.716
|
1948.199
|
1265.662
|
2332.398
|
4591.060
|
478.865
|
1128.987
|
850.363
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.627
|
-1.262
|
-0.619
|
0.202
|
-0.609
|
0.892
|
1.756
|
-0.835
|
— |
1.937
|
— | — | — |
No JSON data available for plots.