Hg_chrom1_TN10mRNA_1167
Organism: Heterodera glycines Gene Locus: chr1:13254370-13256133 Feature type: polypeptideProtein Sequence
Length: 409
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.853 | 1.194 | 0.8 | 0.169 | 0.774 | 0.752 | 0.728 | 1.589 | 1.576 | 1.09 | 0.815 | 1.726 | 2.037 | 0.94 | 1.148 | 1.013 | 0.681 | 0.963 | 2.445 | 1.079 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1113
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-20
|
0.840
|
0.975
|
0.000
|
0.000
|
0.087
|
0.211
|
0.162
|
0.212
|
0.446
|
0.426
|
0.344
|
0.033
|
0.381
|
0.764
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005931
|
1.000
|
1.000
|
Hsc_gene_21259.t1
|
Hsc_gene_21259.t1
|
— |
Q93789.2 Lipase lipl-1 [Caenorhabditis elegans]
|
KAI1723834.1 alpha/beta-hydrolase lipase region domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629|GO:0016788
|
GO:0005575_0.778|GO:0110165_0.776|GO:0008150_0.753|GO:0003674_0.691|GO:0003824_0.610|GO:0016020_0.562|GO:0009987_0.554|GO:0005622_0.524|GO:0005737_0.502|GO:0043226_0.501
|
IPR006693+29-94+|IPR025483+6-402+|IPR029058+16-398_22-396+
|
— |
PF04083+29-94+Partial_alpha/beta-hydrolase_lipase_region
|
G3DSA:3.40.50.1820:FF:000021+17-399+Lipase
|
PTHR11005+22-399+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
409-409
|
1.000
|
1-408
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
47074.210
|
9.623
|
14.500
|
23.227
|
17.359
|
42.543
|
57.457
|
14.181
|
9.046
|
45.966
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
392.461
|
198.408
|
448.050
|
497.870
|
462.437
|
421.224
|
791.594
|
804.745
|
241.803
|
176.541
|
204.510
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.946
|
1.190
|
0.260
|
— | — |
0.919
|
0.826
|
— | — | — | — | — | — |