Hg_chrom1_TN10mRNA_1168
Organism: Heterodera glycines Gene Locus: chr1:13257894-13259464 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 0.217 | 0.793 | 1.074 | 1.09 | 1.438 | 2.225 | 0.467 | 0.277 | 0.631 | 0.378 | 1.1 | 0.433 | 3.954 | 1.017 | 0.623 | 0.664 | 0.944 | 0.24 | 0.275 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1114
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
GEKPPPGPPGQPGRPGPPGPPGKPGQVGK
|
18-40
|
0.967
|
— | — | — | — |
0.000
|
— | — |
0.048
|
0.068
|
0.010
|
0.118
|
0.548
|
0.296
|
0.397
|
0.004
|
0.624
|
0.232
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005932
|
1.000
|
1.000
|
Hsc_gene_21260.t1
|
Hsc_gene_21260.t1
|
— |
P18834.2 Cuticle collagen 14 [Caenorhabditis elegans]
|
KHJ85173.1 nematode cuticle collagen domain protein, partial [Oesophagostomum dentatum]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.946|GO:0005575_0.944|GO:0110165_0.940|GO:0032501_0.886|GO:0032502_0.862|GO:0048856_0.862|GO:0007275_0.838|GO:0071944_0.837|GO:0030312_0.717|GO:0031012_0.701|GO:0062023_0.701|GO:0042303_0.680|GO:0018996_0.670|GO:0040002_0.670|GO:0042335_0.670|GO:0042338_0.670|GO:0060102_0.540
|
IPR002486+24-76_27-76+|IPR008160+180-237_247-304+|IPR050632+30-319+
|
SM01088+24-76+
|
PF01391+180-237_247-304+Collagen_triple_helix_repeat_(20_copies)|PF01484+27-76+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+30-319+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
70-321
|
1.000
|
1-69
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.977
|
32146.940
|
4.559
|
-9.500
|
19.315
|
3.738
|
34.268
|
65.732
|
8.411
|
10.903
|
68.847
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
5419.471
|
795.023
|
84.496
|
121.458
|
12777.625
|
40622.833
|
750.802
|
2211.801
|
19.315
|
2184.185
|
1256.383
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.467
|
-2.848
|
0.635
|
6.685
|
1.685
|
-5.748
|
-4.315
|
-1.412
|
-6.942
|
— |
3.301
|
— | — |
No JSON data available for plots.