Hg_chrom1_TN10mRNA_1169
Organism: Heterodera glycines Gene Locus: chr1:13259750-13263499 Feature type: polypeptideProtein Sequence
Length: 114
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.612 | 1.428 | 0.797 | 0.907 | 1.316 | 2.249 | 0.94 | 0.439 | 1.17 | 0.83 | 0.665 | 1.032 | 0.975 | 1.181 | 1.432 | 0.877 | 1.438 | 0.532 | 0.675 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1115
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.947
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.753
|
0.086
|
0.011
|
0.629
|
0.071
|
0.048
|
0.042
|
0.023
|
0.051
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005933
|
1.000
|
1.000
|
Hsc_gene_21261.t1
|
Hsc_gene_21261.t1
|
— |
Q5RJP9.1 Protein SREK1IP1 [Rattus norvegicus]
|
KAI1723864.1 zinc knuckle domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.926|GO:0110165_0.918|GO:0005622_0.847|GO:0016020_0.797|GO:0043226_0.794|GO:0043229_0.774|GO:0005737_0.766|GO:0043227_0.733|GO:0043231_0.721|GO:0005634_0.643
|
— | — | — | — |
PTHR31437+31-99+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47;88-114
|
1.000
|
48-87
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
12807.250
|
5.857
|
-0.500
|
24.561
|
7.895
|
54.386
|
45.614
|
12.281
|
12.281
|
50.877
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkmagenta
|
1174.112
|
677.438
|
768.227
|
606.461
|
623.048
|
710.277
|
555.718
|
684.057
|
1070.449
|
2599.445
|
1944.161
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.297
|
-0.231
|
— |
0.204
|
-0.344
|
— | — |
-1.387
|
— |
-1.827
|
— | — |
No JSON data available for plots.