Hg_chrom1_TN10mRNA_117
Organism: Heterodera glycines Gene Locus: chr1:804615-807717 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.177 | 0.659 | 0.81 | 0.698 | 1.215 | 0.727 | 0.868 | 1.417 | 1.35 | 0.875 | 1.227 | 1.905 | 1.125 | 0.856 | 1.405 | 0.694 | 1.128 | 0.675 | 1.246 | 0.953 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_113
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-Not_Clustered
|
0.853
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.256
|
0.564
|
0.098
|
0.338
|
0.150
|
0.086
|
0.055
|
0.084
|
0.260
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002875
|
1.000
|
2.000
|
Hsc_gene_24323.t1;Hsc_gene_24323.t2
|
— | — |
P40341.2 Mitochondrial respiratory chain complexes assembly protein YTA12 [Saccharomyces cerevisiae S288C]
|
XP_063851531.1 AFG3-like protein 2 [Scylla paramamosain]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0005575_0.888|GO:0110165_0.881|GO:0008150_0.841|GO:0005622_0.798|GO:0016020_0.797|GO:0043226_0.740|GO:0043229_0.724|GO:0009987_0.694|GO:0005737_0.690|GO:0043227_0.660|GO:0008152_0.643|GO:0043231_0.633|GO:0044238_0.618|GO:0043170_0.588|GO:0019538_0.560|GO:0044237_0.505|GO:0003674_0.503
|
IPR000642+38-215+|IPR037219+37-229_40-225+
|
— |
PF01434+38-215+Peptidase_family_M41
|
— |
PTHR23076+38-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-247
|
1.000
|
1-245
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
27803.940
|
9.482
|
11.500
|
29.555
|
11.741
|
46.964
|
53.036
|
17.814
|
11.741
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
869.572
|
104.130
|
2744.783
|
3606.343
|
1051.355
|
320.020
|
57.211
|
1497.870
|
255.997
|
94.238
|
163.563
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.492
|
4.976
|
0.502
|
-1.810
|
-1.701
|
-2.475
|
2.126
|
-4.570
|
— | — | — | — | — |
No JSON data available for plots.