Hg_chrom1_TN10mRNA_1172
Organism: Heterodera glycines Gene Locus: chr1:13268905-13271519 Feature type: polypeptideProtein Sequence
Length: 570
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 0.857 | 0.925 | 0.484 | 1.257 | 1.215 | 0.543 | 1.053 | 1.52 | 1.541 | 1.116 | 0.929 | 1.559 | 1.147 | 0.859 | 0.977 | 0.892 | 0.718 | 0.675 | 0.877 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1118
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.923
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
LGEV,RGNSRRRRR
|
47-67
|
0.999
|
33-64
|
0.980
|
— | — |
0.000
|
— | — |
0.541
|
0.094
|
0.009
|
0.607
|
0.128
|
0.152
|
0.265
|
0.130
|
0.263
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005936
|
1.000
|
1.000
|
Hsc_gene_21265.t1
|
Hsc_gene_21265.t1
|
— |
O18178.4 Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1 [Caenorhabditis elegans]
|
KAI3422390.1 Serine/threonine-protein phosphatase 2A regulatory subunit pptr-1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000159|GO:0007165|GO:0019888
|
GO:0005575_0.900|GO:0110165_0.878|GO:0005622_0.814|GO:0005737_0.698|GO:0008150_0.672|GO:0009987_0.604|GO:0003674_0.584|GO:0043226_0.546|GO:0005488_0.537|GO:0016020_0.530|GO:0043229_0.528|GO:0065007_0.506
|
IPR002554+45-482_76-479+|IPR011989+84-480+|IPR016024+90-477+
|
— |
PF01603+76-479+Protein_phosphatase_2A_regulatory_B_subunit_(B56_family)
|
G3DSA:1.25.10.10:FF:000010+83-481+Serine/threonine-protein_phosphatase_2A_56_kDa_regulatory_subunit
|
PTHR10257+45-482+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-79;530-570
|
1.000
|
80-529
|
8szk_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
64565.250
|
6.509
|
0.000
|
26.316
|
11.579
|
47.018
|
52.982
|
13.684
|
12.632
|
44.737
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
2801.760
|
2513.752
|
2846.213
|
2447.347
|
2890.607
|
3670.445
|
3343.444
|
4331.727
|
1559.978
|
2821.389
|
2280.784
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.176
|
-0.110
|
0.208
|
0.359
|
— | — |
-0.231
|
— | — | — | — | — |
No JSON data available for plots.