Hg_chrom1_TN10mRNA_1173
Organism: Heterodera glycines Gene Locus: chr1:13272633-13274071 Feature type: polypeptideProtein Sequence
Length: 223
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 1.147 | 1.712 | 0.155 | 2.167 | 0.805 | 0.48 | 1.345 | 0.797 | 0.788 | 1.223 | 1.319 | 0.997 | 0.776 | 2.379 | 1.025 | 0.735 | 0.408 | 0.345 | 0.396 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1119
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
FKVK,RRDIEEREQHSRERRSRD
|
— | — | — | — | — | — |
0.000
|
— | — |
0.815
|
0.124
|
0.019
|
0.359
|
0.038
|
0.048
|
0.132
|
0.030
|
0.051
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0005937
|
1.000
|
1.000
|
Hsc_gene_21266.t1
|
Hsc_gene_21266.t1
|
— |
Q0VFP5.1 Protein CWC15 homolog [Xenopus tropicalis]
|
KAI3422389.1 complexed with cef1p [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0005681
|
GO:0005575_0.928|GO:0110165_0.925|GO:0005622_0.910|GO:0043226_0.864|GO:0043229_0.845|GO:0016020_0.834|GO:0043227_0.792|GO:0043231_0.772|GO:0005634_0.762|GO:0032991_0.560|GO:0008150_0.538
|
IPR006973+1-223+
|
— |
PF04889+1-223+Cwf15/Cwc15_cell_cycle_control_protein
|
— |
PTHR12718+1-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-175
|
1.000
|
176-223
|
9esi_Q
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
26034.620
|
5.752
|
-3.000
|
44.843
|
8.072
|
64.574
|
35.426
|
22.422
|
22.422
|
44.395
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
midnightblue
|
1248.760
|
791.220
|
1029.233
|
913.062
|
1058.488
|
1094.016
|
1377.657
|
1783.363
|
1522.320
|
1303.946
|
1397.535
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.150
|
— | — |
0.182
|
— |
0.344
|
0.600
|
-0.229
|
— | — | — | — | — |
No JSON data available for plots.