Hg_chrom1_TN10mRNA_1175
Organism: Heterodera glycines Gene Locus: chr1:13277167-13280636 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.768 | 0.559 | 0.819 | 1.036 | 0.601 | 0.693 | 0.608 | 2.102 | 0.801 | 1.096 | 0.683 | 1.59 | 2.503 | 2.079 | 1.226 | 2.231 | 0.542 | 0.455 | 0.693 | 0.088 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_1121
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.865
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRAARRSRHELSHKRTHR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.897
|
0.117
|
0.007
|
0.399
|
0.062
|
0.027
|
0.018
|
0.004
|
0.059
|
0.013
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003031
|
1.000
|
2.000
|
Hsc_gene_21268.t1;Hsc_gene_21268.t2
|
— | — |
Q9VZN4.2 Dendritic arbor reduction protein 1 [Drosophila melanogaster]
|
KAI1723814.1 zinc-finger double domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.952|GO:0009987_0.912|GO:0065007_0.854|GO:0050789_0.850|GO:0050794_0.845|GO:0005575_0.782|GO:0110165_0.782|GO:0008152_0.768|GO:0043170_0.768|GO:0003674_0.765|GO:0009058_0.764|GO:0009059_0.764|GO:0044237_0.764|GO:0044249_0.764|GO:0010467_0.753|GO:0019222_0.752|GO:0031323_0.752|GO:0044238_0.751|GO:0080090_0.751|GO:0005488_0.744|GO:0005622_0.740|GO:0060255_0.739|GO:0043226_0.733|GO:0009889_0.727|GO:0031326_0.727|GO:0043229_0.722|GO:0010468_0.721|GO:0010556_0.721|GO:0006139_0.718|GO:0016070_0.718|GO:0032774_0.718|GO:0034654_0.718|GO:0090304_0.718|GO:0141187_0.718|GO:0006351_0.700|GO:0003676_0.692|GO:0097159_0.692|GO:0006355_0.675|GO:0019219_0.675|GO:0051252_0.675|GO:2001141_0.675|GO:0003677_0.658|GO:0043565_0.658|GO:0016020_0.638|GO:0003690_0.625|GO:1990837_0.625|GO:0048518_0.590|GO:0043227_0.579|GO:0043231_0.579|GO:0048522_0.554|GO:0006366_0.551|GO:0000976_0.549|GO:0001067_0.549|GO:0005634_0.525|GO:0009893_0.524|GO:0006357_0.520|GO:0031325_0.513|GO:0032501_0.511|GO:0140110_0.508|GO:0010604_0.506|GO:0009891_0.505|GO:0031328_0.505|GO:0003700_0.501
|
IPR013087+224-248_224-253_226-248_306-328_306-333_308-328+|IPR036236+222-249_291-332+
|
SM00355+224-248_306-328+
|
PF00096+224-248_306-328+Zinc_finger,_C2H2_type
|
G3DSA:3.30.160.60:FF:000032+278-329+Krueppel-like_factor_4
|
PTHR23235+144-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
222-333
|
1.000
|
1-221
|
2ebt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
36749.890
|
8.844
|
15.000
|
22.823
|
14.414
|
46.847
|
53.153
|
14.715
|
8.108
|
54.354
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
731.884
|
527.174
|
498.942
|
330.299
|
288.020
|
296.988
|
376.582
|
393.262
|
542.586
|
1778.327
|
1248.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.309
|
-0.811
|
-0.486
|
-0.229
|
— |
0.352
|
0.300
|
— |
-1.815
|
— |
-2.495
|
— | — |
No JSON data available for plots.